HL_5IMQ_111

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_111 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2711

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

5IMQ|1|A|G|378
5IMQ|1|A|C|379
5IMQ|1|A|G|380
5IMQ|1|A|C|381
5IMQ|1|A|A|382
5IMQ|1|A|A|383
5IMQ|1|A|G|384
5IMQ|1|A|C|385

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S16