HL_5IMQ_117

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAAGUU

Length

7 nucleotides

Bulged bases

5IMQ|1|D|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_117 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.2787

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

5IMQ|1|D|G|1950
5IMQ|1|D|U|1951
5IMQ|1|D|A|1952
5IMQ|1|D|A|1953
5IMQ|1|D|G|1954
5IMQ|1|D|U|1955
5IMQ|1|D|U|1956

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain g

50S ribosomal protein L14