HL_5IMQ_124

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_124 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.2169

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5IMQ|1|D|C|487
5IMQ|1|D|G|488
5IMQ|1|D|G|489
5IMQ|1|D|G|491
5IMQ|1|D|A|492
5IMQ|1|D|G|493

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain o

50S ribosomal protein L22