HL_5IMQ_128

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_128 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.2046

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5IMQ|1|D|C|2551
5IMQ|1|D|U|2552
5IMQ|1|D|G|2553
5IMQ|1|D|U|2554
5IMQ|1|D|U|2555
5IMQ|1|D|C|2556
5IMQ|1|D|G|2557

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain B

Elongation factor 4