HL_5IMR_004

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UCAGUCGGUAGA

Length

12 nucleotides

Bulged bases

5IMR|1|5|U|16, 5IMR|1|5|C|17, 5IMR|1|5|G|18, 5IMR|1|5|G|19, 5IMR|1|5|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_004 not in the Motif Atlas

Homologous match to HL_5IBB_209

Geometric discrepancy: 0.531

The information below is about HL_5IBB_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|5|U|12
5IMR|1|5|C|13
5IMR|1|5|A|14
5IMR|1|5|G|15
5IMR|1|5|U|16
5IMR|1|5|C|17
5IMR|1|5|G|18
5IMR|1|5|G|19
5IMR|1|5|U|20
5IMR|1|5|A|21
5IMR|1|5|G|22
5IMR|1|5|A|23

Current chains

Chain 5

E site- tRNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain Z

50S ribosomal protein L1