5IMR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5IMR_077 | 1/D/1691:1696 | UNCG | homologous HL_5J7L_175 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5IMR_105 | No text annotation | ||
| HL_5IMR_001 | tRNA D-loop | ||
| HL_5IMR_106 | No text annotation | ||
| HL_5IMR_002 | tRNA anticodon loop | ||
| HL_5IMR_003 | T-loop with 2 stacked bulged bases | ||
| HL_5IMR_004 | No text annotation | ||
| HL_5IMR_005 | No text annotation | ||
| HL_5IMR_006 | T-loop with 2 stacked bulged bases | ||
| HL_5IMR_007 | No text annotation | ||
| HL_5IMR_107 | No text annotation | ||
| HL_5IMR_008 | No text annotation | ||
| HL_5IMR_124 | No text annotation | ||
| HL_5IMR_009 | GNRA | ||
| HL_5IMR_010 | No text annotation | ||
| HL_5IMR_108 | No text annotation | ||
| HL_5IMR_109 | tRNA D-loop | ||
| HL_5IMR_011 | No text annotation | ||
| HL_5IMR_012 | GNRA related | ||
| HL_5IMR_013 | GNRA | ||
| HL_5IMR_014 | No text annotation | ||
| HL_5IMR_015 | UNCG | ||
| HL_5IMR_016 | GNRA | ||
| HL_5IMR_017 | No text annotation | ||
| HL_5IMR_018 | GNRA | ||
| HL_5IMR_019 | No text annotation | ||
| HL_5IMR_110 | No text annotation | ||
| HL_5IMR_020 | No text annotation | ||
| HL_5IMR_021 | No text annotation | ||
| HL_5IMR_022 | GNRA | ||
| HL_5IMR_023 | No text annotation | ||
| HL_5IMR_024 | Mini UNCG | ||
| HL_5IMR_111 | No text annotation | ||
| HL_5IMR_025 | GNRA | ||
| HL_5IMR_026 | GNRA | ||
| HL_5IMR_027 | No text annotation | ||
| HL_5IMR_112 | No text annotation | ||
| HL_5IMR_028 | GNRA | ||
| HL_5IMR_029 | No text annotation | ||
| HL_5IMR_030 | GNRA | ||
| HL_5IMR_031 | T-loop related | ||
| HL_5IMR_113 | No text annotation | ||
| HL_5IMR_032 | Mini UNCG | ||
| HL_5IMR_033 | GNRA | ||
| HL_5IMR_034 | No text annotation | ||
| HL_5IMR_035 | T-loop with 3 stacked bulged bases | ||
| HL_5IMR_114 | No text annotation | ||
| HL_5IMR_036 | No text annotation | ||
| HL_5IMR_037 | UNCG | ||
| HL_5IMR_038 | GNRA | ||
| HL_5IMR_039 | No text annotation | ||
| HL_5IMR_125 | No text annotation | ||
| HL_5IMR_040 | Pseudoknot geometry | ||
| HL_5IMR_041 | No text annotation | ||
| HL_5IMR_115 | No text annotation | ||
| HL_5IMR_042 | No text annotation | ||
| HL_5IMR_043 | No text annotation | ||
| HL_5IMR_044 | No text annotation | ||
| HL_5IMR_045 | No text annotation | ||
| HL_5IMR_126 | No text annotation | ||
| HL_5IMR_046 | No text annotation | ||
| HL_5IMR_047 | T-loop with 2 stacked bulged bases | ||
| HL_5IMR_048 | No text annotation | ||
| HL_5IMR_049 | T-loop with unstacked turn | ||
| HL_5IMR_050 | No text annotation | ||
| HL_5IMR_051 | No text annotation | ||
| HL_5IMR_052 | GNRA | ||
| HL_5IMR_053 | Anticodon loop related | ||
| HL_5IMR_127 | GNRA | ||
| HL_5IMR_054 | GNRA | ||
| HL_5IMR_055 | T-loop with 2 stacked bulged bases | ||
| HL_5IMR_056 | No text annotation | ||
| HL_5IMR_057 | GNRA | ||
| HL_5IMR_058 | GNRA wlth tandem sheared | ||
| HL_5IMR_059 | No text annotation | ||
| HL_5IMR_060 | UNCG variation | ||
| HL_5IMR_061 | No text annotation | ||
| HL_5IMR_062 | No text annotation | ||
| HL_5IMR_063 | GNRA | ||
| HL_5IMR_064 | No text annotation | ||
| HL_5IMR_116 | No text annotation | ||
| HL_5IMR_065 | No text annotation | ||
| HL_5IMR_066 | No text annotation | ||
| HL_5IMR_117 | No text annotation | ||
| HL_5IMR_128 | No text annotation | ||
| HL_5IMR_067 | No text annotation | ||
| HL_5IMR_068 | T-loop with 2 stacked bulged bases | ||
| HL_5IMR_069 | Pseudoknot geometry with 3' bulge | ||
| HL_5IMR_118 | No text annotation | ||
| HL_5IMR_070 | No text annotation | ||
| HL_5IMR_071 | No text annotation | ||
| HL_5IMR_072 | No text annotation | ||
| HL_5IMR_073 | Pseudoknot geometry with 3' bulge | ||
| HL_5IMR_074 | No text annotation | ||
| HL_5IMR_075 | No text annotation | ||
| HL_5IMR_129 | No text annotation | ||
| HL_5IMR_119 | No text annotation | ||
| HL_5IMR_076 | GNRA with extra cWW | ||
| HL_5IMR_120 | No text annotation | ||
| HL_5IMR_078 | No text annotation | ||
| HL_5IMR_079 | No text annotation | ||
| HL_5IMR_080 | No text annotation | ||
| HL_5IMR_081 | GNRA | ||
| HL_5IMR_082 | No text annotation | ||
| HL_5IMR_083 | No text annotation | ||
| HL_5IMR_121 | No text annotation | ||
| HL_5IMR_084 | No text annotation | ||
| HL_5IMR_085 | No text annotation | ||
| HL_5IMR_086 | No text annotation | ||
| HL_5IMR_087 | No text annotation | ||
| HL_5IMR_130 | No text annotation | ||
| HL_5IMR_088 | No text annotation | ||
| HL_5IMR_089 | No text annotation | ||
| HL_5IMR_131 | No text annotation | ||
| HL_5IMR_090 | Pseudoknot geometry | ||
| HL_5IMR_091 | No text annotation | ||
| HL_5IMR_122 | tRNA anticodon loop | ||
| HL_5IMR_092 | GNRA | ||
| HL_5IMR_093 | No text annotation | ||
| HL_5IMR_094 | No text annotation | ||
| HL_5IMR_095 | No text annotation | ||
| HL_5IMR_096 | No text annotation | ||
| HL_5IMR_132 | No text annotation | ||
| HL_5IMR_097 | GNRA | ||
| HL_5IMR_098 | No text annotation | ||
| HL_5IMR_123 | No text annotation | ||
| HL_5IMR_099 | No text annotation | ||
| HL_5IMR_100 | No text annotation | ||
| HL_5IMR_101 | No text annotation | ||
| HL_5IMR_102 | GNRA | ||
| HL_5IMR_103 | No text annotation | ||
| HL_5IMR_104 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5IMR_106 | 1/D/1934:1945, 1/D/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_5IMR_169 | 1/D/2079:2083, 1/D/2236:2241 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.2 | |
| IL_5IMR_110 | 1/D/2081:2083, 1/D/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5IMR_001 | No text annotation | ||
| IL_5IMR_002 | Isolated non-canonical cWW pair | ||
| IL_5IMR_138 | Single bulged G | ||
| IL_5IMR_003 | Single bulged A | ||
| IL_5IMR_004 | No text annotation | ||
| IL_5IMR_005 | Minor groove platform with extra cWW | ||
| IL_5IMR_006 | Multiple bulged bases | ||
| IL_5IMR_139 | Isolated non-canonical cWW pair | ||
| IL_5IMR_007 | Tandem non-canonical cWW pairs | ||
| IL_5IMR_008 | Tandem non-canonical cWW pairs | ||
| IL_5IMR_179 | Multiple bulged bases | ||
| IL_5IMR_009 | No text annotation | ||
| IL_5IMR_010 | No text annotation | ||
| IL_5IMR_140 | Triple non-canonical cWW pairs | ||
| IL_5IMR_011 | No text annotation | ||
| IL_5IMR_180 | Tandem non-canonical cWW pairs | ||
| IL_5IMR_141 | Kink-turn with non-sequential stacking | ||
| IL_5IMR_012 | No text annotation | ||
| IL_5IMR_013 | No text annotation | ||
| IL_5IMR_181 | No text annotation | ||
| IL_5IMR_142 | No text annotation | ||
| IL_5IMR_014 | C-loop | ||
| IL_5IMR_015 | Single bulged U | ||
| IL_5IMR_016 | C-loop with extra cWW pair | ||
| IL_5IMR_017 | No text annotation | ||
| IL_5IMR_018 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_5IMR_019 | No text annotation | ||
| IL_5IMR_020 | SSU/LSU pseudoknot | ||
| IL_5IMR_143 | No text annotation | ||
| IL_5IMR_021 | No text annotation | ||
| IL_5IMR_182 | Kink-turn related | ||
| IL_5IMR_022 | Decoding loop related | ||
| IL_5IMR_023 | No text annotation | ||
| IL_5IMR_144 | tSH-tHW-tHS | ||
| IL_5IMR_024 | Major groove platform | ||
| IL_5IMR_025 | Isolated basepair with bulged bases | ||
| IL_5IMR_026 | No text annotation | ||
| IL_5IMR_027 | Major groove platform; stack outside cWW | ||
| IL_5IMR_028 | Major groove platform | ||
| IL_5IMR_029 | Tandem non-canonical cWW pairs | ||
| IL_5IMR_030 | Triple non-canonical cWW pairs | ||
| IL_5IMR_031 | No text annotation | ||
| IL_5IMR_032 | Left turn | ||
| IL_5IMR_033 | No text annotation | ||
| IL_5IMR_034 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5IMR_035 | Single bulged A | ||
| IL_5IMR_036 | Single bulged G | ||
| IL_5IMR_145 | Isolated non-canonical cWW pair | ||
| IL_5IMR_037 | No text annotation | ||
| IL_5IMR_146 | No text annotation | ||
| IL_5IMR_038 | No text annotation | ||
| IL_5IMR_039 | No text annotation | ||
| IL_5IMR_040 | Isolated near basepair | ||
| IL_5IMR_041 | No text annotation | ||
| IL_5IMR_042 | Minor groove platform | ||
| IL_5IMR_043 | Single bulged U | ||
| IL_5IMR_044 | Isolated non-canonical cWW pair | ||
| IL_5IMR_045 | No text annotation | ||
| IL_5IMR_046 | No text annotation | ||
| IL_5IMR_147 | No text annotation | ||
| IL_5IMR_047 | No text annotation | ||
| IL_5IMR_148 | 180 degree turn | ||
| IL_5IMR_149 | Double sheared with non-canonical cWW | ||
| IL_5IMR_048 | No text annotation | ||
| IL_5IMR_150 | No text annotation | ||
| IL_5IMR_049 | No text annotation | ||
| IL_5IMR_183 | Double sheared | ||
| IL_5IMR_050 | No text annotation | ||
| IL_5IMR_051 | No text annotation | ||
| IL_5IMR_052 | No text annotation | ||
| IL_5IMR_053 | Single bulged A | ||
| IL_5IMR_054 | Minor groove platform | ||
| IL_5IMR_151 | Kink-turn | ||
| IL_5IMR_055 | No text annotation | ||
| IL_5IMR_056 | Single stack bend | ||
| IL_5IMR_057 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5IMR_058 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_5IMR_184 | No text annotation | ||
| IL_5IMR_152 | No text annotation | ||
| IL_5IMR_059 | No text annotation | ||
| IL_5IMR_153 | No text annotation | ||
| IL_5IMR_185 | No text annotation | ||
| IL_5IMR_060 | No text annotation | ||
| IL_5IMR_154 | No text annotation | ||
| IL_5IMR_186 | No text annotation | ||
| IL_5IMR_061 | No text annotation | ||
| IL_5IMR_155 | No text annotation | ||
| IL_5IMR_062 | No text annotation | ||
| IL_5IMR_063 | Isolated non-canonical cWW pair | ||
| IL_5IMR_156 | Single bulged A | ||
| IL_5IMR_157 | Quadruple sheared | ||
| IL_5IMR_064 | Triple sheared | ||
| IL_5IMR_065 | No text annotation | ||
| IL_5IMR_066 | No text annotation | ||
| IL_5IMR_187 | No text annotation | ||
| IL_5IMR_067 | No text annotation | ||
| IL_5IMR_158 | No text annotation | ||
| IL_5IMR_068 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5IMR_188 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5IMR_069 | Isolated non-canonical cWW with bulges | ||
| IL_5IMR_159 | No text annotation | ||
| IL_5IMR_070 | C-loop | ||
| IL_5IMR_160 | No text annotation | ||
| IL_5IMR_189 | Isolated non-canonical cWW pair | ||
| IL_5IMR_071 | No text annotation | ||
| IL_5IMR_072 | Single bulged C | ||
| IL_5IMR_073 | UAA/GAN | ||
| IL_5IMR_074 | Major groove intercalation | ||
| IL_5IMR_075 | Single bulged U | ||
| IL_5IMR_076 | Isolated non-canonical cWW pair | ||
| IL_5IMR_077 | No text annotation | ||
| IL_5IMR_161 | No text annotation | ||
| IL_5IMR_190 | No text annotation | ||
| IL_5IMR_078 | Isolated non-canonical cWW pair | ||
| IL_5IMR_079 | No text annotation | ||
| IL_5IMR_162 | No text annotation | ||
| IL_5IMR_080 | No text annotation | ||
| IL_5IMR_081 | No text annotation | ||
| IL_5IMR_082 | Partly complementary | ||
| IL_5IMR_163 | Tandem non-canonical cWW pairs | ||
| IL_5IMR_191 | No text annotation | ||
| IL_5IMR_083 | No text annotation | ||
| IL_5IMR_084 | Kink-turn | ||
| IL_5IMR_085 | Intercalated cWW | ||
| IL_5IMR_086 | No text annotation | ||
| IL_5IMR_192 | Major groove minor groove platform with tHH | ||
| IL_5IMR_164 | No text annotation | ||
| IL_5IMR_087 | UAA/GAN | ||
| IL_5IMR_088 | tSH-tHW-tHS | ||
| IL_5IMR_089 | No text annotation | ||
| IL_5IMR_165 | No text annotation | ||
| IL_5IMR_090 | No text annotation | ||
| IL_5IMR_166 | No text annotation | ||
| IL_5IMR_091 | tSH-tHW | ||
| IL_5IMR_092 | Single stack bend | ||
| IL_5IMR_167 | No text annotation | ||
| IL_5IMR_093 | Isolated non-canonical cWW pair | ||
| IL_5IMR_193 | Single bulged A | ||
| IL_5IMR_094 | No text annotation | ||
| IL_5IMR_095 | No text annotation | ||
| IL_5IMR_096 | tSH-tSH-tHH-tHS | ||
| IL_5IMR_097 | No text annotation | ||
| IL_5IMR_098 | Single bulged A | ||
| IL_5IMR_099 | No text annotation | ||
| IL_5IMR_194 | No text annotation | ||
| IL_5IMR_100 | No text annotation | ||
| IL_5IMR_168 | No text annotation | ||
| IL_5IMR_101 | Major groove intercalation | ||
| IL_5IMR_102 | No text annotation | ||
| IL_5IMR_195 | Minor groove platform, major groove intercalation | ||
| IL_5IMR_103 | UAA/GAN with extra stack | ||
| IL_5IMR_104 | Triple sheared | ||
| IL_5IMR_105 | Other IL | ||
| IL_5IMR_107 | Major groove platform | ||
| IL_5IMR_108 | Single bulged U | ||
| IL_5IMR_109 | No text annotation | ||
| IL_5IMR_111 | No text annotation | ||
| IL_5IMR_170 | No text annotation | ||
| IL_5IMR_196 | No text annotation | ||
| IL_5IMR_112 | No text annotation | ||
| IL_5IMR_197 | No text annotation | ||
| IL_5IMR_113 | No text annotation | ||
| IL_5IMR_114 | No text annotation | ||
| IL_5IMR_171 | No text annotation | ||
| IL_5IMR_115 | No text annotation | ||
| IL_5IMR_116 | Isolated tHS basepair with bulges | ||
| IL_5IMR_172 | No text annotation | ||
| IL_5IMR_117 | Double sheared with near cWW | ||
| IL_5IMR_118 | Major groove platform | ||
| IL_5IMR_173 | No text annotation | ||
| IL_5IMR_119 | No text annotation | ||
| IL_5IMR_120 | No text annotation | ||
| IL_5IMR_121 | Major groove platform | ||
| IL_5IMR_122 | No text annotation | ||
| IL_5IMR_198 | Isolated non-canonical cWW with bulges | ||
| IL_5IMR_199 | Multiple bulged bases | ||
| IL_5IMR_123 | No text annotation | ||
| IL_5IMR_124 | Major groove platform with intercalation | ||
| IL_5IMR_125 | Single bulged A | ||
| IL_5IMR_174 | No text annotation | ||
| IL_5IMR_126 | No text annotation | ||
| IL_5IMR_127 | No text annotation | ||
| IL_5IMR_175 | No text annotation | ||
| IL_5IMR_128 | No text annotation | ||
| IL_5IMR_129 | Multiple bulged bases | ||
| IL_5IMR_130 | UAA/GAN with extra cWW | ||
| IL_5IMR_131 | Single bulged C | ||
| IL_5IMR_132 | Decoding loop related | ||
| IL_5IMR_133 | tHS double platform | ||
| IL_5IMR_134 | Major groove intercalation | ||
| IL_5IMR_135 | No text annotation | ||
| IL_5IMR_136 | No text annotation | ||
| IL_5IMR_176 | No text annotation | ||
| IL_5IMR_137 | No text annotation | ||
| IL_5IMR_177 | Symmetric double minor groove platform | ||
| IL_5IMR_178 | No text annotation | ||
| IL_5IMR_200 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5IMR_046 | 1/D/1772:1793, 1/D/1826:1830, 1/D/1975:1979 | No text annotation | ||
| J5_5IMR_014 | 1/D/2054:2064, 1/D/2446:2455, 1/D/2496:2507, 1/D/2582:2588, 1/D/2606:2615 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5IMR_001 | No text annotation | ||
| J3_5IMR_019 | No text annotation | ||
| J3_5IMR_036 | No text annotation | ||
| J3_5IMR_037 | No text annotation | ||
| J3_5IMR_038 | No text annotation | ||
| J3_5IMR_002 | No text annotation | ||
| J3_5IMR_020 | No text annotation | ||
| J3_5IMR_039 | No text annotation | ||
| J3_5IMR_021 | No text annotation | ||
| J3_5IMR_022 | No text annotation | ||
| J3_5IMR_003 | No text annotation | ||
| J3_5IMR_040 | No text annotation | ||
| J3_5IMR_004 | No text annotation | ||
| J3_5IMR_023 | No text annotation | ||
| J3_5IMR_041 | No text annotation | ||
| J3_5IMR_024 | No text annotation | ||
| J3_5IMR_005 | No text annotation | ||
| J3_5IMR_025 | No text annotation | ||
| J3_5IMR_006 | No text annotation | ||
| J3_5IMR_026 | No text annotation | ||
| J3_5IMR_042 | No text annotation | ||
| J3_5IMR_007 | No text annotation | ||
| J3_5IMR_027 | No text annotation | ||
| J3_5IMR_008 | No text annotation | ||
| J3_5IMR_043 | No text annotation | ||
| J3_5IMR_028 | No text annotation | ||
| J3_5IMR_044 | No text annotation | ||
| J3_5IMR_029 | No text annotation | ||
| J3_5IMR_030 | No text annotation | ||
| J3_5IMR_009 | No text annotation | ||
| J3_5IMR_031 | No text annotation | ||
| J3_5IMR_045 | No text annotation | ||
| J3_5IMR_032 | No text annotation | ||
| J3_5IMR_010 | No text annotation | ||
| J3_5IMR_011 | No text annotation | ||
| J3_5IMR_012 | No text annotation | ||
| J3_5IMR_033 | No text annotation | ||
| J3_5IMR_013 | No text annotation | ||
| J3_5IMR_047 | No text annotation | ||
| J3_5IMR_034 | No text annotation | ||
| J3_5IMR_014 | No text annotation | ||
| J3_5IMR_015 | No text annotation | ||
| J3_5IMR_048 | No text annotation | ||
| J3_5IMR_016 | No text annotation | ||
| J3_5IMR_035 | No text annotation | ||
| J3_5IMR_017 | No text annotation | ||
| J3_5IMR_018 | No text annotation | ||
| J4_5IMR_015 | tRNA junction | ||
| J4_5IMR_001 | No text annotation | ||
| J4_5IMR_002 | No text annotation | ||
| J4_5IMR_016 | No text annotation | ||
| J4_5IMR_017 | No text annotation | ||
| J4_5IMR_003 | No text annotation | ||
| J4_5IMR_004 | No text annotation | ||
| J4_5IMR_005 | No text annotation | ||
| J4_5IMR_006 | No text annotation | ||
| J4_5IMR_007 | No text annotation | ||
| J4_5IMR_018 | No text annotation | ||
| J4_5IMR_008 | No text annotation | ||
| J4_5IMR_019 | No text annotation | ||
| J4_5IMR_009 | No text annotation | ||
| J4_5IMR_010 | No text annotation | ||
| J4_5IMR_011 | No text annotation | ||
| J4_5IMR_012 | No text annotation | ||
| J4_5IMR_020 | No text annotation | ||
| J4_5IMR_013 | No text annotation | ||
| J4_5IMR_014 | No text annotation | ||
| J5_5IMR_001 | No text annotation | ||
| J5_5IMR_002 | No text annotation | ||
| J5_5IMR_009 | No text annotation | ||
| J5_5IMR_010 | No text annotation | ||
| J5_5IMR_003 | No text annotation | ||
| J5_5IMR_011 | No text annotation | ||
| J5_5IMR_004 | No text annotation | ||
| J5_5IMR_005 | No text annotation | ||
| J5_5IMR_012 | No text annotation | ||
| J5_5IMR_013 | No text annotation | ||
| J5_5IMR_006 | No text annotation | ||
| J5_5IMR_007 | No text annotation | ||
| J5_5IMR_015 | No text annotation | ||
| J5_5IMR_008 | No text annotation | ||
| J7_5IMR_001 | No text annotation | ||
| J7_5IMR_002 | No text annotation |
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