5IMR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5IMR_001 | 1/4/13:22 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_5IMR_002 | 1/4/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.6 | |
| HL_5IMR_003 | 1/4/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AXM_003 HL_28252.8 | |
| HL_5IMR_004 | 1/5/12:23 | No text annotation | homologous HL_5IBB_209 NA | |
| HL_5IMR_005 | 1/5/30:40 | No text annotation | ||
| HL_5IMR_006 | 1/5/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6JXM_003 HL_28252.8 | |
| HL_5IMR_007 | 1/A/11:23 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_5IMR_124 | 1/A/80:89 | No text annotation | ||
| HL_5IMR_009 | 1/A/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_5IMR_108 | 1/A/186:191 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_5IMR_011 | 1/A/200:217 | No text annotation | homologous HL_6CZR_076 NA | |
| HL_5IMR_012 | 1/A/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_5IMR_013 | 1/A/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_5IMR_014 | 1/A/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_5IMR_015 | 1/A/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_5IMR_016 | 1/A/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_5IMR_017 | 1/A/419:424 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_5IMR_018 | 1/A/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_5IMR_019 | 1/A/522:527 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_5IMR_110 | 1/A/616:624 | No text annotation | ||
| HL_5IMR_020 | 1/A/617:623 | No text annotation | ||
| HL_5IMR_021 | 1/A/689:698 | No text annotation | geometric HL_4LFB_015 HL_75293.5 | |
| HL_5IMR_022 | 1/A/726:731 | GNRA | homologous HL_6CZR_087 NA | |
| HL_5IMR_023 | 1/A/786:796 | No text annotation | geometric HL_5J7L_017 HL_75293.5 | |
| HL_5IMR_024 | 1/A/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_5IMR_025 | 1/A/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_5IMR_026 | 1/A/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_5IMR_027 | 1/A/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_5IMR_028 | 1/A/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_5IMR_029 | 1/A/1028B:1032A | No text annotation | homologous HL_4LFB_023 NA | |
| HL_5IMR_030 | 1/A/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_5IMR_031 | 1/A/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_5IMR_032 | 1/A/1134:1140 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_5IMR_033 | 1/A/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_5IMR_034 | 1/A/1265:1270 | No text annotation | ||
| HL_5IMR_035 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_5IMR_036 | 1/A/1356:1366 | No text annotation | geometric HL_4LFB_030 HL_06226.4 | |
| HL_5IMR_037 | 1/A/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_5IMR_038 | 1/A/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_5IMR_125 | 1/D/59:68 | No text annotation | homologous HL_9DFE_001 HL_93438.2 | |
| HL_5IMR_040 | 1/D/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_77600.2 | |
| HL_5IMR_041 | 1/D/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_5IMR_042 | 1/D/137:142 | No text annotation | ||
| HL_5IMR_043 | 1/D/150:176 | No text annotation | ||
| HL_5IMR_044 | 1/D/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_5IMR_126 | 1/D/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_5IMR_046 | 1/D/270J:270P | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_5IMR_047 | 1/D/305:312 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
| HL_5IMR_048 | 1/D/319:323 | No text annotation | homologous HL_4WF9_011 HL_75660.5 | |
| HL_5IMR_049 | 1/D/327:335 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.2 | |
| HL_5IMR_050 | 1/D/382:392 | No text annotation | homologous HL_7A0S_013 HL_91503.7 | |
| HL_5IMR_051 | 1/D/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_5IMR_052 | 1/D/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_5IMR_127 | 1/D/487:493 | GNRA | homologous HL_9DFE_015 HL_37824.7 | |
| HL_5IMR_054 | 1/D/544:549 | GNRA | geometric HL_5M0J_001 HL_37824.7 | |
| HL_5IMR_055 | 1/D/566:575 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_28252.8 | |
| HL_5IMR_056 | 1/D/605:623 | No text annotation | ||
| HL_5IMR_057 | 1/D/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_5IMR_058 | 1/D/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_5IMR_059 | 1/D/744:753 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
| HL_5IMR_060 | 1/D/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_5IMR_061 | 1/D/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_5IMR_062 | 1/D/875:902 | No text annotation | ||
| HL_5IMR_063 | 1/D/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_5IMR_064 | 1/D/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5IMR_116 | 1/D/1053:1107 | No text annotation | ||
| HL_5IMR_065 | 1/D/1092:1099 | No text annotation | ||
| HL_5IMR_128 | 1/D/1171:1178 | No text annotation | ||
| HL_5IMR_067 | 1/D/1221:1228 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
| HL_5IMR_068 | 1/D/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_28252.8 | |
| HL_5IMR_069 | 1/D/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_5IMR_118 | 1/D/1357:1374 | No text annotation | ||
| HL_5IMR_070 | 1/D/1361:1370 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
| HL_5IMR_071 | 1/D/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_5IMR_072 | 1/D/1450:1461 | No text annotation | ||
| HL_5IMR_073 | 1/D/1492:1498 | Pseudoknot geometry with 3' bulge | geometric HL_5NDH_001 NA | |
| HL_5IMR_074 | 1/D/1531:1540 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_5IMR_129 | 1/D/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
| HL_5IMR_119 | 1/D/1628:1638 | No text annotation | ||
| HL_5IMR_076 | 1/D/1629:1637 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
| HL_5IMR_077 | 1/D/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_5IMR_120 | 1/D/1712:1746 | No text annotation | ||
| HL_5IMR_078 | 1/D/1725:1734 | No text annotation | ||
| HL_5IMR_079 | 1/D/1752:1756 | No text annotation | homologous HL_7A0S_044 HL_80709.3 | |
| HL_5IMR_080 | 1/D/1806:1811 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_5IMR_081 | 1/D/1864:1878 | GNRA | homologous HL_7A0S_047 HL_37824.7 | |
| HL_5IMR_082 | 1/D/1909:1922 | No text annotation | ||
| HL_5IMR_121 | 1/D/1950:1956 | No text annotation | ||
| HL_5IMR_084 | 1/D/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_5IMR_085 | 1/D/2137:2154 | No text annotation | ||
| HL_5IMR_086 | 1/D/2207:2217 | No text annotation | ||
| HL_5IMR_130 | 1/D/2248:2256 | No text annotation | homologous HL_9DFE_051 HL_85367.2 | |
| HL_5IMR_088 | 1/D/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_5IMR_131 | 1/D/2304:2312 | No text annotation | homologous HL_7A0S_076 HL_50860.2 | |
| HL_5IMR_090 | 1/D/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_5IMR_091 | 1/D/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_5IMR_122 | 1/D/2373:2380 | tRNA anticodon loop | geometric HL_3RG5_006 HL_04259.3 | |
| HL_5IMR_092 | 1/D/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_5IMR_093 | 1/D/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_5IMR_094 | 1/D/2471:2479 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_5IMR_095 | 1/D/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_5IMR_132 | 1/D/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_5IMR_097 | 1/D/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.7 | |
| HL_5IMR_123 | 1/D/2650:2670 | No text annotation | ||
| HL_5IMR_099 | 1/D/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_5IMR_100 | 1/D/2745:2759 | No text annotation | homologous HL_9DFE_064 HL_74055.2 | |
| HL_5IMR_101 | 1/D/2819:2827 | No text annotation | homologous HL_7A0S_067 HL_64690.6 | |
| HL_5IMR_102 | 1/D/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_5IMR_103 | 1/E/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_5IMR_104 | 1/E/86:90 | GNRA | homologous HL_7A0S_070 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5IMR_105 | No text annotation | ||
| HL_5IMR_106 | No text annotation | ||
| HL_5IMR_107 | No text annotation | ||
| HL_5IMR_008 | No text annotation | ||
| HL_5IMR_010 | No text annotation | ||
| HL_5IMR_109 | tRNA D-loop | ||
| HL_5IMR_111 | No text annotation | ||
| HL_5IMR_112 | No text annotation | ||
| HL_5IMR_113 | No text annotation | ||
| HL_5IMR_114 | No text annotation | ||
| HL_5IMR_039 | No text annotation | ||
| HL_5IMR_115 | No text annotation | ||
| HL_5IMR_045 | No text annotation | ||
| HL_5IMR_053 | Anticodon loop related | ||
| HL_5IMR_066 | No text annotation | ||
| HL_5IMR_117 | No text annotation | ||
| HL_5IMR_075 | No text annotation | ||
| HL_5IMR_083 | No text annotation | ||
| HL_5IMR_087 | No text annotation | ||
| HL_5IMR_089 | No text annotation | ||
| HL_5IMR_096 | No text annotation | ||
| HL_5IMR_098 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5IMR_001 | 1/5/4:6, 1/5/66:69 | No text annotation | geometric IL_8CRE_417 IL_99358.1 | |
| IL_5IMR_138 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_5IMR_003 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_5IMR_004 | 1/A/47:52, 1/A/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_5IMR_005 | 1/A/54:57, 1/A/355:357 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_5IMR_006 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_5IMR_139 | 1/A/67:69, 1/A/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_5IMR_179 | 1/A/129:131, 1/A/231:232 | Minor groove platform | homologous IL_6CZR_119 NA | |
| IL_5IMR_009 | 1/A/132:136, 1/A/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_5IMR_010 | 1/A/148:153, 1/A/168:174 | No text annotation | ||
| IL_5IMR_180 | 1/A/186:186C, 1/A/191D:191 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 IL_85033.2 | |
| IL_5IMR_141 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_5IMR_181 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_5IMR_014 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_5IMR_015 | 1/A/367:369, 1/A/392:393 | Single bulged U | geometric IL_2OIU_003 IL_89505.4 | |
| IL_5IMR_016 | 1/A/371:376, 1/A/387:390 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_5IMR_017 | 1/A/409:416, 1/A/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_5IMR_018 | 1/A/446:450, 1/A/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_5IMR_019 | 1/A/450:456, 1/A/476:483 | No text annotation | homologous IL_6CZR_131 NA | |
| IL_5IMR_020 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_5IMR_182 | 1/A/515:521, 1/A/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_5IMR_022 | 1/A/568:575, 1/A/880:882 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_5IMR_144 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_5IMR_024 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_5IMR_025 | 1/A/596:598, 1/A/640:644 | Isolated basepair with bulged bases | geometric IL_1XJR_001 IL_49061.1 | |
| IL_5IMR_026 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_5IMR_027 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | geometric IL_4QK9_003 IL_50694.7 | |
| IL_5IMR_028 | 1/A/657:658, 1/A/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_5IMR_029 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_5IMR_030 | 1/A/673:677, 1/A/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_5IMR_031 | 1/A/683:689, 1/A/698:707 | No text annotation | ||
| IL_5IMR_032 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_5IMR_033 | 1/A/779:786, 1/A/796:803 | No text annotation | ||
| IL_5IMR_034 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_5IMR_035 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_5IMR_036 | 1/A/925:927, 1/A/1390:1391 | Single bulged G | geometric IL_4LFB_036 IL_00225.13 | |
| IL_5IMR_037 | 1/A/933:936, 1/A/1379:1384 | No text annotation | homologous IL_6CZR_149 NA | |
| IL_5IMR_146 | 1/A/985:989, 1/A/1216:1220 | No text annotation | ||
| IL_5IMR_038 | 1/A/993:999, 1/A/1041:1045 | No text annotation | ||
| IL_5IMR_039 | 1/A/1025:1028B, 1/A/1032A:1036 | No text annotation | ||
| IL_5IMR_040 | 1/A/1047:1050, 1/A/1208:1210 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_5IMR_041 | 1/A/1052:1057, 1/A/1203:1206 | No text annotation | homologous IL_6CZR_365 NA | |
| IL_5IMR_042 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | geometric IL_6CZR_155 NA | |
| IL_5IMR_043 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_5IMR_044 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5D0B_001 IL_87907.2 | |
| IL_5IMR_045 | 1/A/1123:1127, 1/A/1145:1150 | No text annotation | ||
| IL_5IMR_046 | 1/A/1127:1132, 1/A/1142:1145 | No text annotation | ||
| IL_5IMR_147 | 1/A/1246:1253, 1/A/1284:1291 | No text annotation | ||
| IL_5IMR_148 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_5IMR_149 | 1/A/1258:1262, 1/A/1273:1277 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_5IMR_150 | 1/A/1399:1416, 1/A/1484:1504 | No text annotation | ||
| IL_5IMR_049 | 1/A/1412:1416, 1/A/1484:1488 | No text annotation | ||
| IL_5IMR_183 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_5IMR_051 | 1/A/1431:1437, 1/A/1464:1469 | No text annotation | ||
| IL_5IMR_052 | 1/A/1440:1447, 1/A/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_5IMR_053 | 1/D/36:37, 1/D/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_5IMR_054 | 1/D/43:44, 1/D/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_5IMR_151 | 1/D/81:85, 1/D/97:105 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
| IL_5IMR_056 | 1/D/183:184, 1/D/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_5IMR_057 | 1/D/188:194, 1/D/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_5IMR_058 | 1/D/239:245, 1/D/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 IL_26307.2 | |
| IL_5IMR_184 | 1/D/273E:284, 1/D/357:363A | No text annotation | ||
| IL_5IMR_059 | 1/D/287:291, 1/D/349:354 | No text annotation | ||
| IL_5IMR_185 | 1/D/288:295, 1/D/343:353 | No text annotation | ||
| IL_5IMR_060 | 1/D/291:295, 1/D/343:349 | No text annotation | ||
| IL_5IMR_186 | 1/D/601:628, 1/D/635:656 | No text annotation | ||
| IL_5IMR_061 | 1/D/672:674, 1/D/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_5IMR_155 | 1/D/672:679, 1/D/798:808 | No text annotation | ||
| IL_5IMR_062 | 1/D/674:679, 1/D/798:806 | No text annotation | ||
| IL_5IMR_156 | 1/D/697:698, 1/D/763:765 | Single bulged A | homologous IL_9DFE_017 IL_31462.6 | |
| IL_5IMR_064 | 1/D/703:707, 1/D/724:729 | Triple sheared | geometric IL_8VTW_020 NA | |
| IL_5IMR_065 | 1/D/737:741, 1/D/756:759 | No text annotation | ||
| IL_5IMR_187 | 1/D/837:839, 1/D/939:942 | No text annotation | ||
| IL_5IMR_067 | 1/D/842:850, 1/D/928:936 | No text annotation | ||
| IL_5IMR_158 | 1/D/842:852, 1/D/925:936 | No text annotation | ||
| IL_5IMR_188 | 1/D/858:862, 1/D/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7A0S_111 IL_38862.4 | |
| IL_5IMR_069 | 1/D/862:864, 1/D/912:915 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_07785.1 | |
| IL_5IMR_159 | 1/D/862:868, 1/D/909:915 | No text annotation | ||
| IL_5IMR_070 | 1/D/864:868, 1/D/909:912 | C-loop with bulged stacked A's | homologous IL_4WF9_033 IL_26222.2 | |
| IL_5IMR_071 | 1/D/952:954, 1/D/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_5IMR_072 | 1/D/994:996, 1/D/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_5IMR_073 | 1/D/998:1002, 1/D/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_5IMR_074 | 1/D/1004:1011, 1/D/1150:1151 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
| IL_5IMR_075 | 1/D/1011:1013, 1/D/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_5IMR_190 | 1/D/1019:1030, 1/D/1124:1143 | No text annotation | ||
| IL_5IMR_078 | 1/D/1031:1034, 1/D/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5IMR_079 | 1/D/1035:1037, 1/D/1119:1120 | No text annotation | ||
| IL_5IMR_162 | 1/D/1035:1053, 1/D/1107:1120 | No text annotation | ||
| IL_5IMR_080 | 1/D/1037:1041, 1/D/1114:1119 | No text annotation | ||
| IL_5IMR_081 | 1/D/1053:1092, 1/D/1099:1107 | No text annotation | ||
| IL_5IMR_163 | 1/D/1197:1200, 1/D/1245:1249 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_85033.2 | |
| IL_5IMR_191 | 1/D/1202:1207, 1/D/1239:1243 | No text annotation | ||
| IL_5IMR_084 | 1/D/1208:1215, 1/D/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_70923.9 | |
| IL_5IMR_085 | 1/D/1219:1221, 1/D/1228:1230 | Intercalated cWW | geometric IL_7A0S_044 IL_31737.3 | |
| IL_5IMR_192 | 1/D/1319:1323, 1/D/1331:1333 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_83150.2 | |
| IL_5IMR_087 | 1/D/1351:1355, 1/D/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_5IMR_088 | 1/D/1357:1361, 1/D/1370:1374 | tSH-tHW-tHS | homologous IL_7A0S_049 IL_17136.7 | |
| IL_5IMR_089 | 1/D/1414:1422, 1/D/1576:1588 | No text annotation | ||
| IL_5IMR_165 | 1/D/1414:1429, 1/D/1564:1588 | No text annotation | ||
| IL_5IMR_090 | 1/D/1432:1435, 1/D/1557:1561 | No text annotation | ||
| IL_5IMR_166 | 1/D/1432:1440, 1/D/1551:1561 | No text annotation | ||
| IL_5IMR_091 | 1/D/1437:1440, 1/D/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5IMR_092 | 1/D/1448:1449A, 1/D/1462:1463 | Single stack bend | homologous IL_7A0S_054 IL_26793.1 | |
| IL_5IMR_167 | 1/D/1474:1483, 1/D/1506:1517 | No text annotation | ||
| IL_5IMR_193 | 1/D/1489:1491, 1/D/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.6 | |
| IL_5IMR_094 | 1/D/1525:1531, 1/D/1540:1546 | No text annotation | ||
| IL_5IMR_095 | 1/D/1651:1656, 1/D/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_5IMR_096 | 1/D/1686:1691, 1/D/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_5IMR_097 | 1/D/1712:1725, 1/D/1734:1746 | No text annotation | ||
| IL_5IMR_098 | 1/D/1770:1771, 1/D/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_5IMR_194 | 1/D/1798:1805, 1/D/1812:1821 | No text annotation | ||
| IL_5IMR_100 | 1/D/1837:1841, 1/D/1901:1903 | No text annotation | ||
| IL_5IMR_168 | 1/D/1837:1842, 1/D/1898:1903 | No text annotation | ||
| IL_5IMR_101 | 1/D/1841:1842, 1/D/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_5IMR_195 | 1/D/1846:1849, 1/D/1893:1894 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_95583.2 | |
| IL_5IMR_103 | 1/D/1851:1855, 1/D/1887:1891 | UAA/GAN with extra pair | homologous IL_7A0S_069 IL_89021.2 | |
| IL_5IMR_104 | 1/D/1856:1860, 1/D/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5IMR_105 | 1/D/1906:1909, 1/D/1922:1924 | Other IL | geometric IL_5TBW_064 NA | |
| IL_5IMR_106 | 1/D/1934:1945, 1/D/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_5IMR_107 | 1/D/2050:2052, 1/D/2617:2618 | Major groove platform | homologous IL_7A0S_073 IL_48076.6 | |
| IL_5IMR_108 | 1/D/2067:2069, 1/D/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5IMR_109 | 1/D/2070:2072, 1/D/2437:2441 | No text annotation | ||
| IL_5IMR_169 | 1/D/2079:2083, 1/D/2236:2241 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
| IL_5IMR_110 | 1/D/2081:2083, 1/D/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5IMR_111 | 1/D/2085:2087, 1/D/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_5IMR_196 | 1/D/2103:2107, 1/D/2181:2186 | No text annotation | ||
| IL_5IMR_112 | 1/D/2105:2107, 1/D/2181:2184 | No text annotation | ||
| IL_5IMR_197 | 1/D/2107:2120, 1/D/2178:2181 | No text annotation | ||
| IL_5IMR_114 | 1/D/2122:2128, 1/D/2160:2176 | No text annotation | ||
| IL_5IMR_115 | 1/D/2129:2137, 1/D/2154:2159 | No text annotation | ||
| IL_5IMR_116 | 1/D/2297:2299, 1/D/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_5IMR_117 | 1/D/2349:2353, 1/D/2364:2368 | Triple sheared | geometric IL_7A0S_056 IL_17948.2 | |
| IL_5IMR_118 | 1/D/2401:2403, 1/D/2414:2415 | Major groove platform | homologous IL_7A0S_082 IL_48076.6 | |
| IL_5IMR_173 | 1/D/2456:2461, 1/D/2489:2495 | No text annotation | ||
| IL_5IMR_120 | 1/D/2466:2471, 1/D/2479:2484 | No text annotation | geometric IL_8P9A_410 IL_85536.2 | |
| IL_5IMR_121 | 1/D/2507:2508, 1/D/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_5IMR_198 | 1/D/2510:2512, 1/D/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_07785.1 | |
| IL_5IMR_199 | 1/D/2512:2513, 1/D/2571:2574 | Multiple bulged bases | homologous IL_7A0S_090 IL_42626.2 | |
| IL_5IMR_124 | 1/D/2522:2523, 1/D/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_02555.1 | |
| IL_5IMR_125 | 1/D/2591:2592, 1/D/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5IMR_174 | 1/D/2626:2640, 1/D/2774:2777 | No text annotation | ||
| IL_5IMR_126 | 1/D/2634:2640, 1/D/2774:2784 | No text annotation | ||
| IL_5IMR_175 | 1/D/2680:2685, 1/D/2724:2727 | No text annotation | ||
| IL_5IMR_128 | 1/D/2685:2692, 1/D/2717:2724 | No text annotation | ||
| IL_5IMR_129 | 1/D/2695:2696, 1/D/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_5IMR_130 | 1/D/2737:2742, 1/D/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_5IMR_131 | 1/D/2838:2839, 1/D/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_5IMR_132 | 1/D/2843:2845, 1/D/2871:2874 | Decoding loop related | homologous IL_7A0S_100 IL_31531.3 | |
| IL_5IMR_133 | 1/D/2847:2852, 1/D/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_5IMR_134 | 1/E/17:18, 1/E/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_5IMR_135 | 1/E/23:28, 1/E/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_5IMR_136 | 1/E/30:31, 1/E/51:54 | No text annotation | geometric IL_8VTW_072 NA | |
| IL_5IMR_177 | 1/E/34:38, 1/E/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_5IMR_200 | 1/E/70:79, 1/E/97:106 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5IMR_002 | Isolated non-canonical cWW pair | ||
| IL_5IMR_007 | Tandem non-canonical cWW pairs | ||
| IL_5IMR_008 | Tandem non-canonical cWW pairs | ||
| IL_5IMR_140 | Triple non-canonical cWW pairs | ||
| IL_5IMR_011 | No text annotation | ||
| IL_5IMR_012 | No text annotation | ||
| IL_5IMR_013 | No text annotation | ||
| IL_5IMR_142 | No text annotation | ||
| IL_5IMR_143 | No text annotation | ||
| IL_5IMR_021 | No text annotation | ||
| IL_5IMR_023 | No text annotation | ||
| IL_5IMR_145 | Isolated non-canonical cWW pair | ||
| IL_5IMR_047 | No text annotation | ||
| IL_5IMR_048 | No text annotation | ||
| IL_5IMR_050 | No text annotation | ||
| IL_5IMR_055 | No text annotation | ||
| IL_5IMR_152 | No text annotation | ||
| IL_5IMR_153 | No text annotation | ||
| IL_5IMR_154 | No text annotation | ||
| IL_5IMR_063 | Isolated non-canonical cWW pair | ||
| IL_5IMR_157 | Quadruple sheared | ||
| IL_5IMR_066 | No text annotation | ||
| IL_5IMR_068 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5IMR_160 | No text annotation | ||
| IL_5IMR_189 | Isolated non-canonical cWW pair | ||
| IL_5IMR_076 | Isolated non-canonical cWW pair | ||
| IL_5IMR_077 | No text annotation | ||
| IL_5IMR_161 | No text annotation | ||
| IL_5IMR_082 | Partly complementary | ||
| IL_5IMR_083 | No text annotation | ||
| IL_5IMR_086 | No text annotation | ||
| IL_5IMR_164 | No text annotation | ||
| IL_5IMR_093 | Isolated non-canonical cWW pair | ||
| IL_5IMR_099 | No text annotation | ||
| IL_5IMR_102 | No text annotation | ||
| IL_5IMR_170 | No text annotation | ||
| IL_5IMR_113 | No text annotation | ||
| IL_5IMR_171 | No text annotation | ||
| IL_5IMR_172 | No text annotation | ||
| IL_5IMR_119 | No text annotation | ||
| IL_5IMR_122 | No text annotation | ||
| IL_5IMR_123 | No text annotation | ||
| IL_5IMR_127 | No text annotation | ||
| IL_5IMR_176 | No text annotation | ||
| IL_5IMR_137 | No text annotation | ||
| IL_5IMR_178 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5IMR_036 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_5IMR_037 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_5IMR_038 | 1/A/585:588, 1/A/651:654, 1/A/754:756 | No text annotation | ||
| J3_5IMR_039 | 1/A/585:588, 1/A/651:655, 1/A/751:756 | No text annotation | ||
| J3_5IMR_040 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_5IMR_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_5IMR_023 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation | homologous J3_5J7L_052 J3_25303.4 | |
| J3_5IMR_041 | 1/A/953:962, 1/A/973:984, 1/A/1221:1228 | No text annotation | ||
| J3_5IMR_005 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation | ||
| J3_5IMR_025 | 1/A/990:999, 1/A/1041:1047, 1/A/1210:1215 | No text annotation | ||
| J3_5IMR_006 | 1/A/1001:1007, 1/A/1022:1025, 1/A/1036:1039 | No text annotation | ||
| J3_5IMR_042 | 1/A/1002:1007, 1/A/1022:1028A, 1/A/1032B:1038 | No text annotation | ||
| J3_5IMR_007 | 1/A/1063:1069, 1/A/1106:1113, 1/A/1187:1193 | No text annotation | ||
| J3_5IMR_027 | 1/A/1063:1068, 1/A/1107:1115, 1/A/1185:1193 | No text annotation | ||
| J3_5IMR_043 | 1/A/1073:1074, 1/A/1083:1087, 1/A/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_5IMR_028 | 1/A/1116:1118, 1/A/1155:1163, 1/A/1173:1184 | No text annotation | ||
| J3_5IMR_044 | 1/D/24:31, 1/D/474:484, 1/D/496:516 | No text annotation | ||
| J3_5IMR_030 | 1/D/32:37, 1/D/442:461, 1/D/468:473 | No text annotation | ||
| J3_5IMR_009 | 1/D/56:57, 1/D/70:76, 1/D/110:114 | No text annotation | geometric J3_4WF9_013 J3_35667.2 | |
| J3_5IMR_045 | 1/D/682:690, 1/D/772:778, 1/D/786:795 | No text annotation | ||
| J3_5IMR_011 | 1/D/698:700, 1/D/732:736, 1/D/760:763 | No text annotation | homologous J3_4WF9_003 J3_44724.7 | |
| J3_5IMR_012 | 1/D/1298:1304, 1/D/1624:1627, 1/D/1639:1642 | No text annotation | ||
| J3_5IMR_046 | 1/D/1772:1793, 1/D/1826:1830, 1/D/1975:1979 | No text annotation | ||
| J3_5IMR_013 | 1/D/2091:2093, 1/D/2196:2205, 1/D/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_5IMR_047 | 1/D/2282:2284, 1/D/2384:2395, 1/D/2421:2427 | No text annotation | homologous J3_7A0S_020 J3_20992.1 | |
| J3_5IMR_048 | 1/D/2295:2297, 1/D/2321:2323, 1/D/2332:2337 | No text annotation | homologous J3_4WF9_008 J3_61124.2 | |
| J3_5IMR_016 | 1/D/2517:2520, 1/D/2545:2547, 1/D/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5IMR_017 | 1/D/2814:2816, 1/D/2830:2836, 1/D/2882:2886 | No text annotation | ||
| J3_5IMR_018 | 1/E/11:16, 1/E/68:69, 1/E/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J4_5IMR_015 | 1/4/7:10, 1/4/25:27, 1/4/43:49, 1/4/65:66 | tRNA junction | homologous J4_4TUE_004 J4_70449.28 | |
| J4_5IMR_016 | 1/5/5:10, 1/5/25:27, 1/5/43:51, 1/5/63:68 | No text annotation | ||
| J4_5IMR_017 | 1/A/115:122, 1/A/239:240, 1/A/286:290, 1/A/310:312 | No text annotation | ||
| J4_5IMR_004 | 1/A/142:144, 1/A/178:183, 1/A/194:198, 1/A/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5IMR_005 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_5IMR_006 | 1/A/943:947, 1/A/1234:1241, 1/A/1296:1314, 1/A/1323:1340 | No text annotation | ||
| J4_5IMR_018 | 1/D/47:54, 1/D/116:121, 1/D/130:131, 1/D/148:178 | No text annotation | ||
| J4_5IMR_008 | 1/D/297:301, 1/D/316:319, 1/D/323:325, 1/D/337:341 | No text annotation | ||
| J4_5IMR_019 | 1/D/1306:1315, 1/D/1337:1345, 1/D/1601:1611, 1/D/1620:1622 | No text annotation | ||
| J4_5IMR_010 | 1/D/1348:1350, 1/D/1381:1386, 1/D/1401:1405, 1/D/1597:1598 | No text annotation | ||
| J4_5IMR_011 | 1/D/1444:1446, 1/D/1465:1473, 1/D/1518:1525, 1/D/1546:1547 | No text annotation | ||
| J4_5IMR_012 | 1/D/1833:1837, 1/D/1903:1909, 1/D/1922:1934, 1/D/1964:1972 | No text annotation | ||
| J4_5IMR_020 | 1/D/2285:2289, 1/D/2343:2347, 1/D/2370:2372, 1/D/2381:2383 | No text annotation | homologous J4_7A0S_009 J4_04930.6 | |
| J4_5IMR_014 | 1/D/2643:2646, 1/D/2674:2676, 1/D/2731:2735, 1/D/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J5_5IMR_001 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | homologous J5_6CZR_020 NA | |
| J5_5IMR_002 | 1/A/53:61, 1/A/106:114, 1/A/313:316, 1/A/337:339, 1/A/350:358 | No text annotation | ||
| J5_5IMR_009 | 1/A/54:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:357 | No text annotation | ||
| J5_5IMR_010 | 1/D/45:46, 1/D/179:184, 1/D/212:235, 1/D/262:266, 1/D/426:433 | No text annotation | ||
| J5_5IMR_011 | 1/D/268:270D, 1/D/270V:273A, 1/D/363E:375, 1/D/399:406, 1/D/421:424 | No text annotation | ||
| J5_5IMR_012 | 1/D/584:589, 1/D/668:671, 1/D/809:812, 1/D/1195:1196, 1/D/1250:1256 | No text annotation | homologous J5_7A0S_004 J5_74302.5 | |
| J5_5IMR_013 | 1/D/1663:1682, 1/D/1706:1707, 1/D/1751:1752, 1/D/1756:1764, 1/D/1988:1997 | No text annotation | ||
| J5_5IMR_014 | 1/D/2054:2064, 1/D/2446:2455, 1/D/2496:2507, 1/D/2582:2588, 1/D/2606:2615 | No text annotation | ||
| J5_5IMR_015 | 1/D/2074:2077, 1/D/2243:2247, 1/D/2257:2259, 1/D/2281:2282, 1/D/2427:2435 | No text annotation | ||
| J7_5IMR_002 | 1/D/817:822, 1/D/835:836, 1/D/943:946, 1/D/971:976, 1/D/987:991, 1/D/1163:1164, 1/D/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5IMR_001 | No text annotation | ||
| J3_5IMR_019 | No text annotation | ||
| J3_5IMR_002 | No text annotation | ||
| J3_5IMR_020 | No text annotation | ||
| J3_5IMR_021 | No text annotation | ||
| J3_5IMR_022 | No text annotation | ||
| J3_5IMR_003 | No text annotation | ||
| J3_5IMR_024 | No text annotation | ||
| J3_5IMR_026 | No text annotation | ||
| J3_5IMR_008 | No text annotation | ||
| J3_5IMR_029 | No text annotation | ||
| J3_5IMR_031 | No text annotation | ||
| J3_5IMR_032 | No text annotation | ||
| J3_5IMR_010 | No text annotation | ||
| J3_5IMR_033 | No text annotation | ||
| J3_5IMR_034 | No text annotation | ||
| J3_5IMR_014 | No text annotation | ||
| J3_5IMR_015 | No text annotation | ||
| J3_5IMR_035 | No text annotation | ||
| J4_5IMR_001 | No text annotation | ||
| J4_5IMR_002 | No text annotation | ||
| J4_5IMR_003 | No text annotation | ||
| J4_5IMR_007 | No text annotation | ||
| J4_5IMR_009 | No text annotation | ||
| J4_5IMR_013 | No text annotation | ||
| J5_5IMR_003 | No text annotation | ||
| J5_5IMR_004 | No text annotation | ||
| J5_5IMR_005 | No text annotation | ||
| J5_5IMR_006 | No text annotation | ||
| J5_5IMR_007 | No text annotation | ||
| J5_5IMR_008 | No text annotation | ||
| J7_5IMR_001 | No text annotation |
Coloring options: