HL_5IMR_015

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5IMR|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_015 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.3004

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

5IMR|1|A|C|342
5IMR|1|A|U|343
5IMR|1|A|A|344
5IMR|1|A|C|345
5IMR|1|A|G|346
5IMR|1|A|G|347

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Elongation factor 4

Chain g

50S ribosomal protein L14

Chain l

50S ribosomal protein L19