HL_5IMR_032

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

5IMR|1|A|C|1137, 5IMR|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_032 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3591

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5IMR|1|A|G|1134
5IMR|1|A|U|1135
5IMR|1|A|U|1136
5IMR|1|A|C|1137
5IMR|1|A|G|1138
5IMR|1|A|G|1139
5IMR|1|A|C|1140

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S9