HL_5IMR_037

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5IMR|1|A|A|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_037 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.4037

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5IMR|1|A|C|1449
5IMR|1|A|U|1450
5IMR|1|A|A|1451
5IMR|1|A|C|1452
5IMR|1|A|G|1453
5IMR|1|A|G|1454

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

30S ribosomal protein S20