HL_5IMR_049

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5IMR|1|D|G|329, 5IMR|1|D|A|330, 5IMR|1|D|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_049 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.2255

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5IMR|1|D|G|327
5IMR|1|D|U|328
5IMR|1|D|G|329
5IMR|1|D|A|330
5IMR|1|D|A|331
5IMR|1|D|A|332
5IMR|1|D|G|333
5IMR|1|D|C|334
5IMR|1|D|C|335

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain q

50S ribosomal protein L24