HL_5IMR_050

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5IMR|1|D|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_050 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.432

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5IMR|1|D|G|382
5IMR|1|D|U|383
5IMR|1|D|U|384
5IMR|1|D|C|385
5IMR|1|D|G|386
5IMR|1|D|U|387
5IMR|1|D|G|388
5IMR|1|D|G|389
5IMR|1|D|A|390
5IMR|1|D|G|391
5IMR|1|D|C|392

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain h

50S ribosomal protein L15

Chain v

50S ribosomal protein L31