HL_5IMR_062

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCUAGGGGGCCCACCAGCCUACCAAAC

Length

27 nucleotides

Bulged bases

5IMR|1|D|C|884, 5IMR|1|D|C|886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|G|875
5IMR|1|D|C|876
5IMR|1|D|U|877
5IMR|1|D|A|878
5IMR|1|D|G|879
5IMR|1|D|G|880
5IMR|1|D|G|881
5IMR|1|D|G|882
5IMR|1|D|G|883
5IMR|1|D|C|884
5IMR|1|D|C|885
5IMR|1|D|C|886
5IMR|1|D|A|887
5IMR|1|D|C|888
5IMR|1|D|C|889
5IMR|1|D|A|890
5IMR|1|D|G|892
5IMR|1|D|C|893
5IMR|1|D|C|894
5IMR|1|D|U|895
5IMR|1|D|A|896
5IMR|1|D|C|897
5IMR|1|D|C|898
5IMR|1|D|A|899
5IMR|1|D|A|900
5IMR|1|D|A|901
5IMR|1|D|C|902

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S13

Chain W

30S ribosomal protein S19

Chain i

50S ribosomal protein L16

Chain r

50S ribosomal protein L25