3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GGUCGUC
Length
7 nucleotides
Bulged bases
5IMR|1|D|G|1325, 5IMR|1|D|U|1329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5IMR_069 not in the Motif Atlas
Homologous match to HL_5J7L_166
Geometric discrepancy: 0.203
The information below is about HL_5J7L_166
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_57176.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

5IMR|1|D|G|1324
5IMR|1|D|G|1325
5IMR|1|D|U|1326
5IMR|1|D|C|1327
5IMR|1|D|G|1328
5IMR|1|D|U|1329
5IMR|1|D|C|1330

Current chains

Chain D
23S ribosomal RNA

Nearby chains

Chain j
50S ribosomal protein L17
Chain o
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2763 s
Application loaded.