HL_5IMR_084

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5IMR|1|D|A|2030, 5IMR|1|D|A|2031, 5IMR|1|D|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_084 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.3267

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5IMR|1|D|G|2027
5IMR|1|D|U|2028
5IMR|1|D|G|2029
5IMR|1|D|A|2030
5IMR|1|D|A|2031
5IMR|1|D|G|2032
5IMR|1|D|A|2033
5IMR|1|D|U|2034
5IMR|1|D|G|2035
5IMR|1|D|C|2036

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain f

50S ribosomal protein L13

Chain w

50S ribosomal protein L32