HL_5IMR_088

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5IMR|1|D|A|2268, 5IMR|1|D|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_088 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.3689

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5IMR|1|D|C|2264
5IMR|1|D|U|2265
5IMR|1|D|A|2266
5IMR|1|D|A|2267
5IMR|1|D|A|2268
5IMR|1|D|A|2269
5IMR|1|D|G|2270
5IMR|1|D|G|2271
5IMR|1|D|U|2272
5IMR|1|D|A|2273
5IMR|1|D|A|2274
5IMR|1|D|C|2275
5IMR|1|D|G|2276

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L16

Chain s

50S ribosomal protein L27