HL_5IMR_090
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGCAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMR_090 not in the Motif Atlas
- Homologous match to HL_7RQB_056
- Geometric discrepancy: 0.2365
- The information below is about HL_7RQB_056
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_12078.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
5IMR|1|D|C|2324
5IMR|1|D|G|2325
5IMR|1|D|C|2326
5IMR|1|D|A|2327
5IMR|1|D|A|2328
5IMR|1|D|G|2329
5IMR|1|D|G|2330
5IMR|1|D|G|2331
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain i
- 50S ribosomal protein L16
- Chain s
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L33
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