HL_5IMR_094

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

5IMR|1|D|U|2473, 5IMR|1|D|C|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_094 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3767

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5IMR|1|D|C|2471
5IMR|1|D|G|2472
5IMR|1|D|U|2473
5IMR|1|D|C|2474
5IMR|1|D|C|2475
5IMR|1|D|A|2476
5IMR|1|D|C|2477
5IMR|1|D|A|2478
5IMR|1|D|G|2479

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain C

Elongation factor 4

Chain i

50S ribosomal protein L16