HL_5IMR_100

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5IMR|1|D|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_100 not in the Motif Atlas

Homologous match to HL_9DFE_064

Geometric discrepancy: 0.4172

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5IMR|1|D|C|2745
5IMR|1|D|U|2746
5IMR|1|D|G|2747
5IMR|1|D|A|2748
5IMR|1|D|A|2749
5IMR|1|D|A|2750
5IMR|1|D|G|2751
5IMR|1|D|C|2752
5IMR|1|D|A|2753
5IMR|1|D|U|2754
5IMR|1|D|C|2755
5IMR|1|D|U|2756
5IMR|1|D|A|2757
5IMR|1|D|A|2758
5IMR|1|D|G|2759

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain f

50S ribosomal protein L13