HL_5IMR_105

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

5IMR|1|4|C|17, 5IMR|1|4|U|17|||A, 5IMR|1|4|G|18, 5IMR|1|4|G|19, 5IMR|1|4|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_105 not in the Motif Atlas

Homologous match to HL_4JYZ_001

Geometric discrepancy: 0.506

The information below is about HL_4JYZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.4

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

5IMR|1|4|G|12
5IMR|1|4|C|13
5IMR|1|4|A|14
5IMR|1|4|G|15
5IMR|1|4|C|16
5IMR|1|4|C|17
5IMR|1|4|U|17|||A
5IMR|1|4|G|18
5IMR|1|4|G|19
5IMR|1|4|U|20
5IMR|1|4|A|21
5IMR|1|4|G|22
5IMR|1|4|C|23

Current chains

Chain 4

P site- tRNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain d

50S ribosomal protein L5