HL_5IMR_109

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGCUUUGCC

Length

9 nucleotides

Bulged bases

5IMR|1|A|U|208, 5IMR|1|A|U|209, 5IMR|1|A|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_109 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3697

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

5IMR|1|A|G|199
5IMR|1|A|G|200
5IMR|1|A|C|201
5IMR|1|A|U|208
5IMR|1|A|U|209
5IMR|1|A|U|210
5IMR|1|A|G|216
5IMR|1|A|C|217
5IMR|1|A|C|218

Current chains

Chain A

16S ribosomal RNA

Nearby chains