3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GCUAACGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5IMR_111 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.3937
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

5IMR|1|A|G|861
5IMR|1|A|C|862
5IMR|1|A|U|863
5IMR|1|A|A|864
5IMR|1|A|A|865
5IMR|1|A|C|866
5IMR|1|A|G|867
5IMR|1|A|C|868

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S5
Chain L
30S ribosomal protein S8

Coloring options:


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