HL_5IMR_116

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAAUAGCUCACUGG

Length

55 nucleotides

Bulged bases

5IMR|1|D|A|1057, 5IMR|1|D|G|1059, 5IMR|1|D|U|1061, 5IMR|1|D|U|1065, 5IMR|1|D|U|1066, 5IMR|1|D|A|1070, 5IMR|1|D|A|1073, 5IMR|1|D|G|1074, 5IMR|1|D|U|1078, 5IMR|1|D|C|1079, 5IMR|1|D|A|1086, 5IMR|1|D|A|1088, 5IMR|1|D|A|1095, 5IMR|1|D|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|C|1053
5IMR|1|D|A|1054
5IMR|1|D|G|1055
5IMR|1|D|G|1056
5IMR|1|D|A|1057
5IMR|1|D|G|1058
5IMR|1|D|G|1059
5IMR|1|D|U|1060
5IMR|1|D|U|1061
5IMR|1|D|G|1062
5IMR|1|D|G|1063
5IMR|1|D|C|1064
5IMR|1|D|U|1065
5IMR|1|D|U|1066
5IMR|1|D|A|1067
5IMR|1|D|G|1068
5IMR|1|D|A|1069
5IMR|1|D|A|1070
5IMR|1|D|G|1071
5IMR|1|D|C|1072
5IMR|1|D|A|1073
5IMR|1|D|G|1074
5IMR|1|D|C|1075
5IMR|1|D|C|1076
5IMR|1|D|A|1077
5IMR|1|D|U|1078
5IMR|1|D|C|1079
5IMR|1|D|C|1080
5IMR|1|D|U|1081
5IMR|1|D|U|1082
5IMR|1|D|U|1083
5IMR|1|D|A|1084
5IMR|1|D|A|1085
5IMR|1|D|A|1086
5IMR|1|D|G|1087
5IMR|1|D|A|1088
5IMR|1|D|G|1089
5IMR|1|D|U|1090
5IMR|1|D|G|1091
5IMR|1|D|C|1092
5IMR|1|D|G|1093
5IMR|1|D|U|1094
5IMR|1|D|A|1095
5IMR|1|D|A|1096
5IMR|1|D|U|1097
5IMR|1|D|A|1098
5IMR|1|D|G|1099
5IMR|1|D|C|1100
5IMR|1|D|U|1101
5IMR|1|D|C|1102
5IMR|1|D|A|1103
5IMR|1|D|C|1104
5IMR|1|D|U|1105
5IMR|1|D|G|1106
5IMR|1|D|G|1107

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain 2

50S ribosomal protein L10

Chain 3

50S ribosomal protein L11

Chain C

Elongation factor 4

Chain e

50S ribosomal protein L6

Chain r

50S ribosomal protein L25