HL_5IMR_118

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGAAGCCGAAAGGCGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|U|1357
5IMR|1|D|G|1358
5IMR|1|D|A|1359
5IMR|1|D|A|1360
5IMR|1|D|G|1361
5IMR|1|D|C|1362
5IMR|1|D|C|1363
5IMR|1|D|G|1364
5IMR|1|D|A|1365
5IMR|1|D|A|1366
5IMR|1|D|A|1367
5IMR|1|D|G|1368
5IMR|1|D|G|1369
5IMR|1|D|C|1370
5IMR|1|D|G|1371
5IMR|1|D|U|1372
5IMR|1|D|A|1373
5IMR|1|D|G|1374

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L31

Chain y

50S ribosomal protein L34