HL_5IMR_125
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMR_125 not in the Motif Atlas
- Homologous match to HL_9DFE_001
- Geometric discrepancy: 0.3175
- The information below is about HL_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5IMR|1|D|U|59
5IMR|1|D|G|60
5IMR|1|D|G|61
5IMR|1|D|C|62
5IMR|1|D|U|63
5IMR|1|D|A|64
5IMR|1|D|C|65
5IMR|1|D|C|66
5IMR|1|D|U|67
5IMR|1|D|G|68
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain p
- 50S ribosomal protein L23
- Chain t
- 50S ribosomal protein L29
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