HL_5IMR_129
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGACACAG
- Length
- 8 nucleotides
- Bulged bases
- 5IMR|1|D|A|1614, 5IMR|1|D|C|1615, 5IMR|1|D|A|1616, 5IMR|1|D|A|1618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMR_129 not in the Motif Atlas
- Homologous match to HL_7A0S_040
- Geometric discrepancy: 0.4922
- The information below is about HL_7A0S_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89567.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5IMR|1|D|C|1612
5IMR|1|D|G|1613
5IMR|1|D|A|1614
5IMR|1|D|C|1615
5IMR|1|D|A|1616
5IMR|1|D|C|1617
5IMR|1|D|A|1618
5IMR|1|D|G|1619
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain o
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L34
Coloring options: