HL_5IMR_130
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5IMR|1|D|G|2250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMR_130 not in the Motif Atlas
- Homologous match to HL_9DFE_051
- Geometric discrepancy: 0.3866
- The information below is about HL_9DFE_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5IMR|1|D|C|2248
5IMR|1|D|U|2249
5IMR|1|D|G|2250
5IMR|1|D|G|2251
5IMR|1|D|G|2252
5IMR|1|D|G|2253
5IMR|1|D|C|2254
5IMR|1|D|G|2255
5IMR|1|D|G|2256
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain C
- Elongation factor 4
- Chain i
- 50S ribosomal protein L16
- Chain s
- 50S ribosomal protein L27
Coloring options: