HL_5IMR_131

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

5IMR|1|D|A|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_131 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.5728

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5IMR|1|D|G|2304
5IMR|1|D|A|2305
5IMR|1|D|C|2306
5IMR|1|D|G|2307
5IMR|1|D|G|2308
5IMR|1|D|A|2309
5IMR|1|D|A|2310
5IMR|1|D|A|2311
5IMR|1|D|U|2312

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L5