HL_5IQR_009

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5IQR|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1646

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5IQR|1|1|C|305
5IQR|1|1|U|306
5IQR|1|1|G|307
5IQR|1|1|G|308
5IQR|1|1|A|309
5IQR|1|1|A|310
5IQR|1|1|A|311
5IQR|1|1|G|312

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain U

50S ribosomal protein L24