HL_5IQR_077

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0907

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5IQR|1|2|A|320
5IQR|1|2|A|321
5IQR|1|2|C|322
5IQR|1|2|U|323
5IQR|1|2|G|324
5IQR|1|2|A|325
5IQR|1|2|G|326
5IQR|1|2|A|327
5IQR|1|2|C|328
5IQR|1|2|A|329
5IQR|1|2|C|330
5IQR|1|2|G|331
5IQR|1|2|G|332
5IQR|1|2|U|333

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20