HL_5IQR_096

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_096 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1371

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5IQR|1|2|C|1265
5IQR|1|2|G|1266
5IQR|1|2|C|1267
5IQR|1|2|G|1268
5IQR|1|2|A|1269
5IQR|1|2|G|1270

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain r

30S ribosomal protein S13

Chain x

30S ribosomal protein S19