HL_5IQR_113

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

5IQR|1|1|U|958, 5IQR|1|1|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_113 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1628

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5IQR|1|1|PSU|955
5IQR|1|1|G|956
5IQR|1|1|C|957
5IQR|1|1|U|958
5IQR|1|1|A|959
5IQR|1|1|A|960
5IQR|1|1|C|961
5IQR|1|1|G|962

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16