HL_5IT8_013

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_013 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2229

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5IT8|1|AA|G|521
5IT8|1|AA|C|522
5IT8|1|AA|A|523
5IT8|1|AA|G|524
5IT8|1|AA|C|525
5IT8|1|AA|C|526
5IT8|1|AA|G7M|527
5IT8|1|AA|C|528

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12