5IT8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5IT8_001 | 1/AA/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_5IT8_002 | 1/AA/80:89 | No text annotation | homologous HL_5J7L_002 NA | |
| HL_5IT8_003 | 1/AA/158:163 | GNRA | homologous HL_5J7L_003 NA | |
| HL_5IT8_004 | 1/AA/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_5IT8_205 | 1/AA/203:214 | No text annotation | ||
| HL_5IT8_005 | 1/AA/207:212 | UNCG | geometric HL_5J7L_005 NA | |
| HL_5IT8_006 | 1/AA/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_5IT8_007 | 1/AA/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_5IT8_008 | 1/AA/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_5IT8_009 | 1/AA/342:347 | UNCG | homologous HL_5J7L_009 NA | |
| HL_5IT8_010 | 1/AA/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_5IT8_011 | 1/AA/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_5IT8_012 | 1/AA/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_5IT8_206 | 1/AA/522:527 | GNRA variation | homologous HL_5J7L_205 NA | |
| HL_5IT8_014 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_5IT8_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_5IT8_016 | 1/AA/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_5IT8_017 | 1/AA/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_5IT8_018 | 1/AA/840:846 | No text annotation | homologous HL_5J7L_018 NA | |
| HL_5IT8_019 | 1/AA/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_5IT8_020 | 1/AA/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_5IT8_021 | 1/AA/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_5IT8_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_5IT8_023 | 1/AA/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_5IT8_024 | 1/AA/1089:1096 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_5IT8_025 | 1/AA/1134:1140 | No text annotation | homologous HL_5J7L_025 NA | |
| HL_5IT8_026 | 1/AA/1165:1171 | GNRA | homologous HL_5J7L_026 NA | |
| HL_5IT8_027 | 1/AA/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
| HL_5IT8_028 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 NA | |
| HL_5IT8_029 | 1/AA/1356:1366 | No text annotation | homologous HL_5J7L_029 NA | |
| HL_5IT8_030 | 1/AA/1449:1454 | UNCG | homologous HL_5J7L_030 NA | |
| HL_5IT8_031 | 1/AA/1515:1520 | GNRA | homologous HL_5J7L_031 NA | |
| HL_5IT8_032 | 1/BA/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_5IT8_207 | 1/BA/77:92 | No text annotation | ||
| HL_5IT8_034 | 1/BA/158:163 | GNRA | homologous HL_5J7L_003 NA | |
| HL_5IT8_035 | 1/BA/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_5IT8_037 | 1/BA/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_5IT8_038 | 1/BA/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_5IT8_039 | 1/BA/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_5IT8_040 | 1/BA/342:347 | UNCG | homologous HL_5J7L_009 NA | |
| HL_5IT8_042 | 1/BA/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_5IT8_043 | 1/BA/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_5IT8_209 | 1/BA/522:527 | GNRA variation | homologous HL_5J7L_205 NA | |
| HL_5IT8_045 | 1/BA/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_5IT8_046 | 1/BA/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_5IT8_047 | 1/BA/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_5IT8_048 | 1/BA/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_5IT8_049 | 1/BA/840:846 | No text annotation | geometric HL_8C3A_221 NA | |
| HL_5IT8_050 | 1/BA/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_5IT8_051 | 1/BA/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_5IT8_052 | 1/BA/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_5IT8_053 | 1/BA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_5IT8_054 | 1/BA/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_5IT8_055 | 1/BA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_5IT8_056 | 1/BA/1134:1140 | No text annotation | homologous HL_5J7L_025 NA | |
| HL_5IT8_057 | 1/BA/1165:1171 | GNRA | homologous HL_5J7L_026 NA | |
| HL_5IT8_058 | 1/BA/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
| HL_5IT8_060 | 1/BA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_5IT8_061 | 1/BA/1449:1454 | UNCG | homologous HL_5J7L_030 NA | |
| HL_5IT8_062 | 1/BA/1515:1520 | GNRA | homologous HL_5J7L_031 NA | |
| HL_5IT8_063 | 1/CA/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_5IT8_064 | 1/CA/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_5IT8_065 | 1/CA/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_5IT8_066 | 1/CA/137:142 | No text annotation | homologous HL_5J7L_137 NA | |
| HL_5IT8_067 | 1/CA/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_5IT8_068 | 1/CA/194:201 | No text annotation | homologous HL_5J7L_139 NA | |
| HL_5IT8_069 | 1/CA/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_5IT8_070 | 1/CA/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_5IT8_071 | 1/CA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_5IT8_072 | 1/CA/319:323 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_5IT8_073 | 1/CA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_5IT8_074 | 1/CA/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_5IT8_075 | 1/CA/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_5IT8_076 | 1/CA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_5IT8_077 | 1/CA/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_5IT8_078 | 1/CA/543:550 | No text annotation | homologous HL_5J7L_149 NA | |
| HL_5IT8_079 | 1/CA/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_5IT8_080 | 1/CA/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_5IT8_081 | 1/CA/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_5IT8_082 | 1/CA/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_5IT8_083 | 1/CA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_5IT8_084 | 1/CA/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
| HL_5IT8_085 | 1/CA/779:785 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_5IT8_086 | 1/CA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_5IT8_210 | 1/CA/955:962 | GNRA | homologous HL_5J7L_211 NA | |
| HL_5IT8_089 | 1/CA/978:985 | No text annotation | homologous HL_4WF9_028 HL_47171.1 | |
| HL_5IT8_090 | 1/CA/1064:1074 | No text annotation | homologous HL_5J7L_161 NA | |
| HL_5IT8_211 | 1/CA/1091:1100 | No text annotation | homologous HL_5J7L_212 NA | |
| HL_5IT8_091 | 1/CA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_5IT8_212 | 1/CA/1168:1181 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_5IT8_092 | 1/CA/1171:1178 | No text annotation | ||
| HL_5IT8_094 | 1/CA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_5IT8_095 | 1/CA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_5IT8_096 | 1/CA/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_5IT8_097 | 1/CA/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_5IT8_098 | 1/CA/1451:1459 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_5IT8_099 | 1/CA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_5IT8_101 | 1/CA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_5IT8_102 | 1/CA/1612:1619 | No text annotation | homologous HL_5J7L_173 NA | |
| HL_5IT8_103 | 1/CA/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_5IT8_104 | 1/CA/1691:1696 | UNCG | homologous HL_4WF9_040 HL_61337.1 | |
| HL_5IT8_213 | 1/CA/1727:1733 | No text annotation | homologous HL_5J7L_214 NA | |
| HL_5IT8_106 | 1/CA/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_5IT8_107 | 1/CA/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_5IT8_108 | 1/CA/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_5IT8_109 | 1/CA/1868:1873 | GNRA variation | homologous HL_5J7L_180 NA | |
| HL_5IT8_110 | 1/CA/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_5IT8_111 | 1/CA/1949:1957 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_5IT8_112 | 1/CA/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_5IT8_114 | 1/CA/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_5IT8_115 | 1/CA/2248:2256 | No text annotation | homologous HL_5J7L_186 NA | |
| HL_5IT8_116 | 1/CA/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_5IT8_219 | 1/CA/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_02452.1 | |
| HL_5IT8_118 | 1/CA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_5IT8_119 | 1/CA/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_5IT8_120 | 1/CA/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_5IT8_121 | 1/CA/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_5IT8_122 | 1/CA/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_5IT8_123 | 1/CA/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_5IT8_124 | 1/CA/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_5IT8_125 | 1/CA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5IT8_126 | 1/CA/2658:2663 | GNRA | geometric HL_5J7L_197 NA | |
| HL_5IT8_127 | 1/CA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_5IT8_128 | 1/CA/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_5IT8_130 | 1/CA/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_5IT8_131 | 1/CA/2856:2861 | GNRA | homologous HL_7A0S_068 HL_34789.1 | |
| HL_5IT8_214 | 1/CB/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_5IT8_132 | 1/CB/38:44 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_5IT8_133 | 1/CB/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_5IT8_134 | 1/DA/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_5IT8_135 | 1/DA/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_5IT8_136 | 1/DA/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_5IT8_137 | 1/DA/137:142 | No text annotation | homologous HL_5J7L_137 NA | |
| HL_5IT8_138 | 1/DA/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_5IT8_139 | 1/DA/194:201 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_5IT8_140 | 1/DA/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_5IT8_141 | 1/DA/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_5IT8_142 | 1/DA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_5IT8_143 | 1/DA/319:323 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_5IT8_144 | 1/DA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_5IT8_145 | 1/DA/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_5IT8_146 | 1/DA/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_5IT8_147 | 1/DA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_5IT8_148 | 1/DA/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_5IT8_149 | 1/DA/543:550 | No text annotation | homologous HL_5J7L_149 NA | |
| HL_5IT8_150 | 1/DA/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_5IT8_151 | 1/DA/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_5IT8_152 | 1/DA/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_5IT8_153 | 1/DA/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_5IT8_154 | 1/DA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_5IT8_155 | 1/DA/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
| HL_5IT8_156 | 1/DA/779:785 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_5IT8_157 | 1/DA/826:831 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_5IT8_215 | 1/DA/955:962 | GNRA | homologous HL_5J7L_211 NA | |
| HL_5IT8_160 | 1/DA/978:985 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_5IT8_161 | 1/DA/1064:1074 | No text annotation | homologous HL_5J7L_161 NA | |
| HL_5IT8_216 | 1/DA/1091:1100 | No text annotation | homologous HL_5J7L_212 NA | |
| HL_5IT8_162 | 1/DA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_5IT8_220 | 1/DA/1171:1178 | No text annotation | homologous HL_5J7L_163 NA | |
| HL_5IT8_164 | 1/DA/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_5IT8_165 | 1/DA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_5IT8_166 | 1/DA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_5IT8_167 | 1/DA/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_5IT8_168 | 1/DA/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_5IT8_169 | 1/DA/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_5IT8_170 | 1/DA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_5IT8_171 | 1/DA/1533:1538 | UNCG | homologous HL_5J7L_171 NA | |
| HL_5IT8_172 | 1/DA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_5IT8_173 | 1/DA/1612:1619 | No text annotation | homologous HL_5J7L_173 NA | |
| HL_5IT8_174 | 1/DA/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_5IT8_175 | 1/DA/1691:1696 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_5IT8_217 | 1/DA/1727:1733 | No text annotation | homologous HL_5J7L_214 NA | |
| HL_5IT8_177 | 1/DA/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_5IT8_178 | 1/DA/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_5IT8_179 | 1/DA/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_5IT8_180 | 1/DA/1868:1873 | GNRA variation | homologous HL_5J7L_180 NA | |
| HL_5IT8_181 | 1/DA/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_5IT8_182 | 1/DA/1949:1957 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_5IT8_183 | 1/DA/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_5IT8_184 | 1/DA/2143:2148 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_5IT8_185 | 1/DA/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_5IT8_186 | 1/DA/2248:2256 | No text annotation | homologous HL_5J7L_186 NA | |
| HL_5IT8_187 | 1/DA/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_5IT8_221 | 1/DA/2304:2312 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_5IT8_189 | 1/DA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_5IT8_190 | 1/DA/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_5IT8_191 | 1/DA/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_5IT8_192 | 1/DA/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_5IT8_193 | 1/DA/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_5IT8_194 | 1/DA/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_5IT8_195 | 1/DA/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_5IT8_196 | 1/DA/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
| HL_5IT8_197 | 1/DA/2658:2663 | GNRA | homologous HL_5J7L_197 NA | |
| HL_5IT8_198 | 1/DA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_5IT8_199 | 1/DA/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_5IT8_200 | 1/DA/2796:2799 | No text annotation | geometric HL_6U8D_003 HL_32346.5 | |
| HL_5IT8_201 | 1/DA/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_5IT8_202 | 1/DA/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
| HL_5IT8_218 | 1/DB/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_5IT8_203 | 1/DB/38:44 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_5IT8_204 | 1/DB/86:90 | Mini UNCG | homologous HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5IT8_013 | No text annotation | ||
| HL_5IT8_033 | No text annotation | ||
| HL_5IT8_208 | No text annotation | ||
| HL_5IT8_036 | UNCG | ||
| HL_5IT8_041 | GNRA | ||
| HL_5IT8_044 | No text annotation | ||
| HL_5IT8_059 | T-loop with 3 stacked bulged bases | ||
| HL_5IT8_087 | No text annotation | ||
| HL_5IT8_088 | No text annotation | ||
| HL_5IT8_093 | GNRA | ||
| HL_5IT8_100 | UNCG | ||
| HL_5IT8_105 | No text annotation | ||
| HL_5IT8_113 | No text annotation | ||
| HL_5IT8_117 | No text annotation | ||
| HL_5IT8_129 | No text annotation | ||
| HL_5IT8_158 | No text annotation | ||
| HL_5IT8_159 | No text annotation | ||
| HL_5IT8_163 | No text annotation | ||
| HL_5IT8_176 | No text annotation | ||
| HL_5IT8_188 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5IT8_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_5IT8_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_5IT8_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_5IT8_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_5J7L_004 NA | |
| IL_5IT8_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_5IT8_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_5IT8_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_5IT8_401 | 1/AA/75:76, 1/AA/93:95 | Single bulged G | homologous IL_5J7L_395 NA | |
| IL_5IT8_009 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_5IT8_010 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_5IT8_011 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_5IT8_012 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_5IT8_013 | 1/AA/203:207, 1/AA/212:214 | No text annotation | homologous IL_5J7L_013 NA | |
| IL_5IT8_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_5IT8_015 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_5IT8_016 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_5IT8_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_5IT8_018 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_5IT8_019 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_5IT8_020 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_5IT8_021 | 1/AA/440:442, 1/AA/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_5IT8_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_5IT8_023 | 1/AA/450:455, 1/AA/477:483 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_5IT8_024 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_5IT8_025 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | homologous IL_5J7L_025 NA | |
| IL_5IT8_026 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_5IT8_027 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_5IT8_028 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_5IT8_029 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_5IT8_030 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_5IT8_031 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 NA | |
| IL_5IT8_032 | 1/AA/658:659, 1/AA/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_5IT8_033 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_5IT8_367 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_5IT8_035 | 1/AA/684:688, 1/AA/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_5IT8_036 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_5IT8_037 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_5IT8_038 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_5IT8_039 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_5IT8_040 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_5IT8_041 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_5IT8_042 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_5J7L_042 NA | |
| IL_5IT8_043 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_5IT8_044 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_5IT8_045 | 1/AA/1003:1008, 1/AA/1021:1037 | No text annotation | homologous IL_5J7L_045 NA | |
| IL_5IT8_046 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | geometric IL_5J7L_046 NA | |
| IL_5IT8_048 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_5IT8_049 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_5IT8_050 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_5IT8_051 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_5IT8_052 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_5IT8_053 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_5IT8_054 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_5IT8_055 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_5IT8_056 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_5IT8_057 | 1/AA/1259:1263, 1/AA/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_5IT8_058 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | homologous IL_5J7L_057 NA | |
| IL_5IT8_059 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_5IT8_060 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5IT8_368 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_5IT8_369 | 1/AA/1407:1409, 1/AA/1491:1494 | No text annotation | homologous IL_5J7L_364 NA | |
| IL_5IT8_062 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5IT8_063 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_5IT8_064 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_5IT8_065 | 1/AA/1440:1442, 1/AA/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
| IL_5IT8_066 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_5IT8_067 | 1/BA/30:32, 1/BA/552:553 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_5IT8_068 | 1/BA/44:45, 1/BA/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_5IT8_069 | 1/BA/47:52, 1/BA/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_5IT8_070 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform | homologous IL_5J7L_004 NA | |
| IL_5IT8_072 | 1/BA/67:69, 1/BA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_5IT8_073 | 1/BA/70:73, 1/BA/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_5IT8_402 | 1/BA/75:76, 1/BA/93:95 | Single bulged G | homologous IL_5J7L_395 NA | |
| IL_5IT8_075 | 1/BA/128:131, 1/BA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_5IT8_076 | 1/BA/132:136, 1/BA/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_5IT8_077 | 1/BA/144:146, 1/BA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_5IT8_078 | 1/BA/147:153, 1/BA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_5IT8_080 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_5IT8_081 | 1/BA/249:252, 1/BA/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_5IT8_082 | 1/BA/292:293, 1/BA/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_5IT8_083 | 1/BA/367:369, 1/BA/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_5IT8_084 | 1/BA/371:375, 1/BA/389:390 | C-loop | geometric IL_5J7L_018 NA | |
| IL_5IT8_085 | 1/BA/375:376, 1/BA/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_5IT8_086 | 1/BA/409:416, 1/BA/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_5IT8_087 | 1/BA/440:442, 1/BA/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_5IT8_088 | 1/BA/446:450, 1/BA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_5IT8_089 | 1/BA/450:455, 1/BA/477:483 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_5IT8_090 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_5IT8_091 | 1/BA/515:521, 1/BA/528:536 | Kink-turn related | homologous IL_5J7L_025 NA | |
| IL_5IT8_092 | 1/BA/569:575, 1/BA/880:881 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_5IT8_093 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_5IT8_094 | 1/BA/594:596, 1/BA/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_5IT8_095 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_5IT8_096 | 1/BA/605:612, 1/BA/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_5IT8_097 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 NA | |
| IL_5IT8_098 | 1/BA/658:659, 1/BA/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_5IT8_099 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_5IT8_371 | 1/BA/673:677, 1/BA/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_5IT8_101 | 1/BA/684:688, 1/BA/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_5IT8_102 | 1/BA/774:778, 1/BA/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_5IT8_103 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_5IT8_104 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_5IT8_105 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_5IT8_106 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_5IT8_107 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_5IT8_109 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_5IT8_110 | 1/BA/998:999, 1/BA/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_5IT8_111 | 1/BA/1003:1008, 1/BA/1021:1037 | No text annotation | homologous IL_5J7L_045 NA | |
| IL_5IT8_112 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U | geometric IL_5J7L_046 NA | |
| IL_5IT8_372 | 1/BA/1052:1056, 1/BA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_5IT8_114 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_5IT8_115 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_5IT8_116 | 1/BA/1061:1063, 1/BA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 NA | |
| IL_5IT8_117 | 1/BA/1124:1128, 1/BA/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_5IT8_118 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_5IT8_119 | 1/BA/1158:1161, 1/BA/1175:1181 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_5IT8_120 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_5IT8_121 | 1/BA/1255:1258, 1/BA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_5IT8_122 | 1/BA/1259:1263, 1/BA/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_5IT8_123 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation | geometric IL_5J7L_057 NA | |
| IL_5IT8_124 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_5IT8_125 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5IT8_373 | 1/BA/1405:1407, 1/BA/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_5IT8_374 | 1/BA/1407:1409, 1/BA/1491:1494 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
| IL_5IT8_127 | 1/BA/1412:1414, 1/BA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5IT8_128 | 1/BA/1416:1419, 1/BA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_5IT8_129 | 1/BA/1430:1435, 1/BA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_5IT8_130 | 1/BA/1440:1442, 1/BA/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
| IL_5IT8_131 | 1/BA/1445:1448, 1/BA/1455:1457 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_5IT8_132 | 1/CA/24:30, 1/CA/510:516 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
| IL_5IT8_133 | 1/CA/36:37, 1/CA/442:444 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_5IT8_134 | 1/CA/43:44, 1/CA/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_5IT8_135 | 1/CA/81:85, 1/CA/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_5IT8_137 | 1/CA/188:194, 1/CA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_5IT8_138 | 1/CA/239:245, 1/CA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_5IT8_139 | 1/CA/269:271, 1/CA/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_5IT8_140 | 1/CA/274:281, 1/CA/359:363 | No text annotation | homologous IL_5J7L_253 NA | |
| IL_5IT8_141 | 1/CA/293:295, 1/CA/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_5IT8_142 | 1/CA/481:484, 1/CA/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_5IT8_143 | 1/CA/536:539, 1/CA/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_5IT8_144 | 1/CA/564:566, 1/CA/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_5IT8_145 | 1/CA/606:610, 1/CA/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_5IT8_146 | 1/CA/672:674, 1/CA/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 NA | |
| IL_5IT8_147 | 1/CA/674:678, 1/CA/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 NA | |
| IL_5IT8_148 | 1/CA/697:698, 1/CA/763:765 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_5IT8_149 | 1/CA/702:703, 1/CA/728:730 | Single bulged G | geometric IL_4WF9_023 IL_28408.1 | |
| IL_5IT8_150 | 1/CA/703:707, 1/CA/724:728 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_5IT8_151 | 1/CA/738:740, 1/CA/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_5IT8_152 | 1/CA/775:777, 1/CA/787:791 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_5IT8_153 | 1/CA/837:838, 1/CA/940:942 | Single stack bend | homologous IL_5J7L_266 NA | |
| IL_5IT8_154 | 1/CA/844:847, 1/CA/933:934 | 90 degree turn | homologous IL_5J7L_267 NA | |
| IL_5IT8_375 | 1/CA/844:848, 1/CA/930:934 | No text annotation | geometric IL_5J7L_399 NA | |
| IL_5IT8_155 | 1/CA/847:848, 1/CA/930:933 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_5IT8_156 | 1/CA/850:851, 1/CA/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_5IT8_157 | 1/CA/856:862, 1/CA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_5IT8_158 | 1/CA/862:863, 1/CA/913:915 | Single bulged G | homologous IL_5J7L_271 NA | |
| IL_5IT8_159 | 1/CA/864:868, 1/CA/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_5IT8_160 | 1/CA/870:872, 1/CA/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_5IT8_161 | 1/CA/875:879, 1/CA/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_5IT8_163 | 1/CA/994:996, 1/CA/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_5IT8_164 | 1/CA/998:1002, 1/CA/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_5IT8_165 | 1/CA/1004:1011, 1/CA/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_5IT8_166 | 1/CA/1011:1013, 1/CA/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_5IT8_167 | 1/CA/1018:1024, 1/CA/1140:1144 | Kink-turn related | homologous IL_5J7L_280 NA | |
| IL_5IT8_168 | 1/CA/1024:1030, 1/CA/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_5IT8_169 | 1/CA/1031:1034, 1/CA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_5IT8_170 | 1/CA/1038:1041, 1/CA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_5IT8_376 | 1/CA/1043:1051, 1/CA/1108:1112 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_5IT8_172 | 1/CA/1059:1062, 1/CA/1076:1079 | No text annotation | homologous IL_5J7L_285 NA | |
| IL_5IT8_378 | 1/CA/1087:1090, 1/CA/1101:1102 | Major groove platform | homologous IL_5J7L_385 NA | |
| IL_5IT8_379 | 1/CA/1196:1198, 1/CA/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_5IT8_175 | 1/CA/1202:1206, 1/CA/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_5IT8_176 | 1/CA/1208:1215, 1/CA/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_5IT8_177 | 1/CA/1262:1269, 1/CA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_5IT8_178 | 1/CA/1310:1313, 1/CA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_74641.1 | |
| IL_5IT8_180 | 1/CA/1351:1355, 1/CA/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_5IT8_181 | 1/CA/1357:1361, 1/CA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_5IT8_182 | 1/CA/1415:1416, 1/CA/1582:1587 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_5IT8_183 | 1/CA/1417:1421, 1/CA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_5IT8_184 | 1/CA/1432:1435, 1/CA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_5IT8_185 | 1/CA/1437:1440, 1/CA/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_5IT8_186 | 1/CA/1450:1451, 1/CA/1459:1461 | Single bulged U | homologous IL_5J7L_298 NA | |
| IL_5IT8_187 | 1/CA/1468:1471, 1/CA/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_5IT8_188 | 1/CA/1474:1478, 1/CA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_5IT8_189 | 1/CA/1481:1482, 1/CA/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
| IL_5IT8_190 | 1/CA/1489:1491, 1/CA/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_5IT8_191 | 1/CA/1526:1529, 1/CA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_5IT8_192 | 1/CA/1651:1656, 1/CA/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_5IT8_193 | 1/CA/1663:1665, 1/CA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_5IT8_194 | 1/CA/1666:1669, 1/CA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
| IL_5IT8_380 | 1/CA/1666:1674, 1/CA/1990:1994 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_5IT8_195 | 1/CA/1669:1674, 1/CA/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 NA | |
| IL_5IT8_196 | 1/CA/1686:1691, 1/CA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 NA | |
| IL_5IT8_197 | 1/CA/1712:1718, 1/CA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_5IT8_198 | 1/CA/1720:1724, 1/CA/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_5IT8_199 | 1/CA/1727:1728, 1/CA/1731:1733 | Single bulged C | homologous IL_5J7L_311 NA | |
| IL_5IT8_200 | 1/CA/1770:1771, 1/CA/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_5IT8_201 | 1/CA/1798:1804, 1/CA/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_5IT8_202 | 1/CA/1837:1840, 1/CA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_5IT8_203 | 1/CA/1841:1842, 1/CA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_5IT8_204 | 1/CA/1846:1849, 1/CA/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_5IT8_381 | 1/CA/1851:1860, 1/CA/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_5IT8_205 | 1/CA/1864:1867, 1/CA/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_5IT8_206 | 1/CA/1933:1934, 1/CA/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_5IT8_207 | 1/CA/1934:1945, 1/CA/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_5IT8_208 | 1/CA/2050:2052, 1/CA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_5IT8_209 | 1/CA/2054:2056, 1/CA/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_5IT8_382 | 1/CA/2067:2069, 1/CA/2442:2443 | Single bulged U | homologous IL_5J7L_388 NA | |
| IL_5IT8_212 | 1/CA/2070:2071, 1/CA/2438:2441 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_5IT8_213 | 1/CA/2081:2083, 1/CA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_5IT8_214 | 1/CA/2085:2087, 1/CA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_5IT8_215 | 1/CA/2103:2105, 1/CA/2184:2186 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.1 | |
| IL_5IT8_216 | 1/CA/2108:2110, 1/CA/2179:2181 | Isolated non-canonical cWW pair | geometric IL_4KZD_003 IL_68118.1 | |
| IL_5IT8_384 | 1/CA/2110:2120, 1/CA/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_5IT8_218 | 1/CA/2123:2127, 1/CA/2161:2175 | No text annotation | ||
| IL_5IT8_385 | 1/CA/2123:2129, 1/CA/2159:2175 | No text annotation | ||
| IL_5IT8_219 | 1/CA/2129:2136, 1/CA/2155:2159 | Kink-turn | homologous IL_5J7L_330 NA | |
| IL_5IT8_220 | 1/CA/2202:2204, 1/CA/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_5IT8_221 | 1/CA/2350:2353, 1/CA/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_5IT8_222 | 1/CA/2401:2403, 1/CA/2414:2415 | No text annotation | ||
| IL_5IT8_386 | 1/CA/2453:2454, 1/CA/2498:2500 | Single stack bend | homologous IL_5J7L_391 NA | |
| IL_5IT8_387 | 1/CA/2454:2455, 1/CA/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.7 | |
| IL_5IT8_388 | 1/CA/2457:2459, 1/CA/2493:2494 | Major groove platform | geometric IL_5J7L_393 NA | |
| IL_5IT8_389 | 1/CA/2457:2461, 1/CA/2489:2494 | No text annotation | ||
| IL_5IT8_225 | 1/CA/2459:2461, 1/CA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_5IT8_226 | 1/CA/2466:2470, 1/CA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_5IT8_390 | 1/CA/2507:2508, 1/CA/2580:2582 | Major groove platform | homologous IL_5J7L_394 NA | |
| IL_5IT8_228 | 1/CA/2510:2512, 1/CA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_5IT8_229 | 1/CA/2512:2513, 1/CA/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_5IT8_230 | 1/CA/2522:2523, 1/CA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_5IT8_232 | 1/CA/2591:2592, 1/CA/2601:2603 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_5IT8_233 | 1/CA/2636:2640, 1/CA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_5IT8_234 | 1/CA/2652:2658, 1/CA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 NA | |
| IL_5IT8_235 | 1/CA/2680:2684, 1/CA/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_5IT8_236 | 1/CA/2687:2691, 1/CA/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_5IT8_237 | 1/CA/2695:2696, 1/CA/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_5IT8_238 | 1/CA/2737:2742, 1/CA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_5IT8_240 | 1/CA/2806:2811, 1/CA/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_5IT8_241 | 1/CA/2838:2839, 1/CA/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_5IT8_242 | 1/CA/2843:2846, 1/CA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_5IT8_243 | 1/CA/2847:2852, 1/CA/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_5IT8_244 | 1/CB/17:18, 1/CB/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_5IT8_245 | 1/CB/23:28, 1/CB/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_5IT8_246 | 1/CB/30:31, 1/CB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_5IT8_247 | 1/CB/34:38, 1/CB/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 NA | |
| IL_5IT8_248 | 1/CB/71:79, 1/CB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_5IT8_249 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
| IL_5IT8_250 | 1/DA/36:37, 1/DA/442:444 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_5IT8_251 | 1/DA/43:44, 1/DA/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_5IT8_252 | 1/DA/81:85, 1/DA/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_5IT8_253 | 1/DA/183:184, 1/DA/212:214 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_5IT8_254 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 NA | |
| IL_5IT8_255 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_5IT8_256 | 1/DA/269:271, 1/DA/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_5IT8_257 | 1/DA/274:281, 1/DA/359:363 | No text annotation | homologous IL_5J7L_253 NA | |
| IL_5IT8_258 | 1/DA/293:295, 1/DA/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_5IT8_259 | 1/DA/481:484, 1/DA/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_5IT8_260 | 1/DA/536:539, 1/DA/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_5IT8_261 | 1/DA/564:566, 1/DA/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 NA | |
| IL_5IT8_262 | 1/DA/606:610, 1/DA/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_5IT8_263 | 1/DA/672:674, 1/DA/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 NA | |
| IL_5IT8_264 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 NA | |
| IL_5IT8_265 | 1/DA/697:698, 1/DA/763:765 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_5IT8_266 | 1/DA/702:703, 1/DA/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_5IT8_267 | 1/DA/703:707, 1/DA/724:728 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_5IT8_268 | 1/DA/738:740, 1/DA/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_5IT8_269 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_5IT8_270 | 1/DA/837:838, 1/DA/940:942 | Single stack bend | homologous IL_5J7L_266 NA | |
| IL_5IT8_273 | 1/DA/850:851, 1/DA/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_5IT8_274 | 1/DA/856:862, 1/DA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_5IT8_275 | 1/DA/862:863, 1/DA/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_5IT8_276 | 1/DA/864:868, 1/DA/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_5IT8_277 | 1/DA/870:872, 1/DA/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_5IT8_278 | 1/DA/875:879, 1/DA/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_5IT8_279 | 1/DA/880:881, 1/DA/895:897 | No text annotation | homologous IL_5J7L_275 NA | |
| IL_5IT8_272 | 1/DA/847:848, 1/DA/930:933 | Stack outside cWW | homologous IL_5J7L_268 NA | |
| IL_5IT8_403 | 1/DA/930:934, 1/DA/844:848 | No text annotation | homologous IL_5J7L_399 NA | |
| IL_5IT8_271 | 1/DA/844:847, 1/DA/933:934 | 90 degree turn | geometric IL_5J7L_267 NA | |
| IL_5IT8_280 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_5IT8_281 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_5IT8_282 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_5IT8_283 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_5IT8_284 | 1/DA/1018:1024, 1/DA/1140:1144 | Kink-turn related | geometric IL_5J7L_280 NA | |
| IL_5IT8_285 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_5IT8_286 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_5IT8_287 | 1/DA/1038:1041, 1/DA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_5IT8_288 | 1/DA/1043:1051, 1/DA/1108:1112 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_5IT8_289 | 1/DA/1059:1062, 1/DA/1076:1079 | No text annotation | homologous IL_5J7L_285 NA | |
| IL_5IT8_392 | 1/DA/1087:1090, 1/DA/1101:1102 | Major groove platform | homologous IL_5J7L_385 NA | |
| IL_5IT8_291 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_5IT8_292 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_5IT8_293 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_5IT8_294 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_5IT8_295 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 NA | |
| IL_5IT8_296 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_5IT8_297 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_5IT8_298 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_5IT8_299 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_5IT8_300 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_5IT8_301 | 1/DA/1432:1435, 1/DA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_5IT8_302 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_5IT8_303 | 1/DA/1450:1451, 1/DA/1459:1461 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_5IT8_304 | 1/DA/1468:1471, 1/DA/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_5IT8_305 | 1/DA/1474:1478, 1/DA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_5IT8_306 | 1/DA/1481:1482, 1/DA/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
| IL_5IT8_307 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_5IT8_308 | 1/DA/1526:1529, 1/DA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_5IT8_309 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_5IT8_310 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_5IT8_311 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 NA | |
| IL_5IT8_393 | 1/DA/1666:1674, 1/DA/1990:1994 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_5IT8_312 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_5IT8_313 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_5IT8_314 | 1/DA/1712:1718, 1/DA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_5IT8_315 | 1/DA/1720:1724, 1/DA/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_5IT8_316 | 1/DA/1727:1728, 1/DA/1731:1733 | Single bulged C | homologous IL_5J7L_311 NA | |
| IL_5IT8_317 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_5IT8_318 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_5IT8_319 | 1/DA/1837:1840, 1/DA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_5IT8_320 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_5IT8_321 | 1/DA/1846:1849, 1/DA/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_5IT8_394 | 1/DA/1851:1860, 1/DA/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_5IT8_322 | 1/DA/1864:1867, 1/DA/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_5IT8_323 | 1/DA/1933:1934, 1/DA/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 NA | |
| IL_5IT8_324 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_5IT8_325 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_5IT8_326 | 1/DA/2054:2056, 1/DA/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_5IT8_395 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U | homologous IL_5J7L_388 NA | |
| IL_5IT8_329 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform | geometric IL_5J7L_324 NA | |
| IL_5IT8_330 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_5IT8_331 | 1/DA/2085:2087, 1/DA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_5IT8_332 | 1/DA/2103:2106, 1/DA/2183:2186 | Other IL | homologous IL_5J7L_327 NA | |
| IL_5IT8_404 | 1/DA/2108:2120, 1/DA/2178:2181 | No text annotation | ||
| IL_5IT8_396 | 1/DA/2123:2128, 1/DA/2160:2175 | Kink-turn | homologous IL_5J7L_390 NA | |
| IL_5IT8_334 | 1/DA/2124:2128, 1/DA/2160:2174 | Kink-turn related | homologous IL_5J7L_329 NA | |
| IL_5IT8_335 | 1/DA/2129:2136, 1/DA/2155:2159 | Kink-turn | homologous IL_5J7L_330 NA | |
| IL_5IT8_336 | 1/DA/2202:2204, 1/DA/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_5IT8_337 | 1/DA/2297:2299, 1/DA/2317:2321 | No text annotation | homologous IL_5J7L_332 NA | |
| IL_5IT8_338 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_5IT8_339 | 1/DA/2401:2403, 1/DA/2414:2415 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_5IT8_397 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend | homologous IL_5J7L_391 NA | |
| IL_5IT8_398 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform | homologous IL_5J7L_392 NA | |
| IL_5IT8_399 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform | homologous IL_5J7L_393 NA | |
| IL_5IT8_342 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_5IT8_343 | 1/DA/2466:2470, 1/DA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_5IT8_400 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform | homologous IL_5J7L_394 NA | |
| IL_5IT8_345 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_5IT8_346 | 1/DA/2512:2513, 1/DA/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_5IT8_347 | 1/DA/2522:2523, 1/DA/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_5IT8_349 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A | geometric IL_5J7L_344 NA | |
| IL_5IT8_350 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_5IT8_351 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_5IT8_352 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_5IT8_353 | 1/DA/2687:2691, 1/DA/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_5IT8_354 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_5IT8_355 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_5IT8_356 | 1/DA/2795:2796, 1/DA/2799:2801 | Single bulged A | geometric IL_4WF9_022 IL_14190.1 | |
| IL_5IT8_357 | 1/DA/2806:2811, 1/DA/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_5IT8_358 | 1/DA/2838:2839, 1/DA/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_5IT8_359 | 1/DA/2843:2846, 1/DA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_5IT8_360 | 1/DA/2847:2852, 1/DA/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_5IT8_361 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_5IT8_362 | 1/DB/23:28, 1/DB/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_5IT8_363 | 1/DB/30:31, 1/DB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_5IT8_364 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 NA | |
| IL_5IT8_365 | 1/DB/71:79, 1/DB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5IT8_366 | No text annotation | ||
| IL_5IT8_008 | Single bulged G, near cWW | ||
| IL_5IT8_034 | No text annotation | ||
| IL_5IT8_047 | No text annotation | ||
| IL_5IT8_061 | No text annotation | ||
| IL_5IT8_071 | Multiple bulged bases | ||
| IL_5IT8_370 | No text annotation | ||
| IL_5IT8_074 | Single bulged G, near cWW | ||
| IL_5IT8_079 | No text annotation | ||
| IL_5IT8_100 | No text annotation | ||
| IL_5IT8_108 | Minor groove platform | ||
| IL_5IT8_113 | No text annotation | ||
| IL_5IT8_126 | Partly complementary | ||
| IL_5IT8_136 | Single stack bend | ||
| IL_5IT8_162 | No text annotation | ||
| IL_5IT8_171 | No text annotation | ||
| IL_5IT8_377 | No text annotation | ||
| IL_5IT8_173 | No text annotation | ||
| IL_5IT8_174 | Tandem non-canonical cWW pairs | ||
| IL_5IT8_179 | C-loop | ||
| IL_5IT8_210 | No text annotation | ||
| IL_5IT8_211 | No text annotation | ||
| IL_5IT8_383 | tSH-tHW-tHS-cWW | ||
| IL_5IT8_217 | Isolated non-canonical cWW pair | ||
| IL_5IT8_223 | No text annotation | ||
| IL_5IT8_224 | No text annotation | ||
| IL_5IT8_227 | No text annotation | ||
| IL_5IT8_231 | No text annotation | ||
| IL_5IT8_239 | Single bulged A | ||
| IL_5IT8_391 | No text annotation | ||
| IL_5IT8_290 | Major groove platform with extra cWW | ||
| IL_5IT8_327 | No text annotation | ||
| IL_5IT8_328 | No text annotation | ||
| IL_5IT8_333 | No text annotation | ||
| IL_5IT8_340 | No text annotation | ||
| IL_5IT8_341 | No text annotation | ||
| IL_5IT8_344 | No text annotation | ||
| IL_5IT8_348 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5IT8_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_5IT8_051 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_5IT8_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_5IT8_052 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_5IT8_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_5IT8_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_5IT8_053 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_5J7L_052 NA | |
| J3_5IT8_005 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_5IT8_006 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_5IT8_007 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_5IT8_054 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_5IT8_008 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_5IT8_009 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_5J7L_009 NA | |
| J3_5IT8_010 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_5IT8_055 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_5IT8_011 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_5J7L_011 NA | |
| J3_5IT8_012 | 1/BA/46:47, 1/BA/361:367, 1/BA/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_5IT8_056 | 1/BA/46:52, 1/BA/359:367, 1/BA/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_5IT8_013 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_5IT8_057 | 1/BA/586:588, 1/BA/651:655, 1/BA/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_5IT8_014 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_5IT8_015 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_5IT8_058 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation | homologous J3_5J7L_052 NA | |
| J3_5IT8_016 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_5IT8_017 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_5IT8_018 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_5IT8_059 | 1/BA/990:997, 1/BA/1044:1047, 1/BA/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_5IT8_019 | 1/BA/1063:1068, 1/BA/1107:1113, 1/BA/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_5IT8_020 | 1/BA/1073:1074, 1/BA/1083:1087, 1/BA/1098:1102 | No text annotation | homologous J3_5J7L_009 NA | |
| J3_5IT8_021 | 1/BA/1116:1118, 1/BA/1155:1158, 1/BA/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_5IT8_060 | 1/BA/1116:1118, 1/BA/1155:1161, 1/BA/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_5IT8_022 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation | homologous J3_5J7L_011 NA | |
| J3_5IT8_023 | 1/CA/30:31, 1/CA/474:481, 1/CA/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_5IT8_061 | 1/CA/30:31, 1/CA/474:484, 1/CA/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_5IT8_062 | 1/CA/32:35, 1/CA/445:461, 1/CA/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_5IT8_071 | 1/CA/56:57, 1/CA/70:76, 1/CA/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_5IT8_025 | 1/CA/683:689, 1/CA/773:775, 1/CA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_5IT8_026 | 1/CA/698:700, 1/CA/732:736, 1/CA/760:763 | No text annotation | homologous J3_5J7L_039 NA | |
| J3_5IT8_027 | 1/CA/1055:1057, 1/CA/1081:1087, 1/CA/1102:1104 | No text annotation | homologous J3_5J7L_040 NA | |
| J3_5IT8_028 | 1/CA/1298:1303, 1/CA/1625:1627, 1/CA/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_5IT8_029 | 1/CA/1306:1309, 1/CA/1605:1611, 1/CA/1620:1622 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_5IT8_030 | 1/CA/1344:1349, 1/CA/1382:1385, 1/CA/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_5IT8_063 | 1/CA/1424:1429, 1/CA/1564:1565, 1/CA/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_5IT8_031 | 1/CA/2091:2093, 1/CA/2196:2200, 1/CA/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_5IT8_064 | 1/CA/2282:2284, 1/CA/2384:2395, 1/CA/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_5IT8_032 | 1/CA/2295:2299, 1/CA/2317:2323, 1/CA/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_5IT8_033 | 1/CA/2517:2520, 1/CA/2545:2547, 1/CA/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_5IT8_034 | 1/CA/2789:2791, 1/CA/2805:2806, 1/CA/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_5IT8_072 | 1/CA/2812:2815, 1/CA/2831:2836, 1/CA/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_5IT8_036 | 1/CB/10:16, 1/CB/68:70, 1/CB/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J3_5IT8_037 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_5IT8_065 | 1/DA/30:31, 1/DA/474:484, 1/DA/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_5IT8_066 | 1/DA/32:35, 1/DA/445:461, 1/DA/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_5IT8_038 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_5IT8_067 | 1/DA/297:301, 1/DA/316:325, 1/DA/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_5IT8_039 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_5IT8_040 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation | homologous J3_5J7L_039 NA | |
| J3_5IT8_041 | 1/DA/1055:1057, 1/DA/1081:1087, 1/DA/1102:1104 | No text annotation | homologous J3_5J7L_040 NA | |
| J3_5IT8_042 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_5IT8_043 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_5IT8_044 | 1/DA/1344:1349, 1/DA/1382:1385, 1/DA/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_5IT8_068 | 1/DA/1424:1429, 1/DA/1564:1565, 1/DA/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_5IT8_045 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_5IT8_069 | 1/DA/2282:2284, 1/DA/2384:2395, 1/DA/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_5IT8_046 | 1/DA/2295:2297, 1/DA/2321:2323, 1/DA/2332:2337 | No text annotation | homologous J3_5J7L_045 NA | |
| J3_5IT8_070 | 1/DA/2295:2299, 1/DA/2317:2323, 1/DA/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_5IT8_047 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_5IT8_048 | 1/DA/2789:2791, 1/DA/2805:2806, 1/DA/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_5IT8_049 | 1/DA/2812:2815, 1/DA/2831:2836, 1/DA/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_5IT8_050 | 1/DB/10:16, 1/DB/68:70, 1/DB/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J4_5IT8_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_5IT8_002 | 1/AA/142:144, 1/AA/178:184, 1/AA/193:198, 1/AA/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_5IT8_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_5IT8_004 | 1/BA/115:122, 1/BA/239:240, 1/BA/286:289, 1/BA/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_5IT8_005 | 1/BA/142:144, 1/BA/178:184, 1/BA/193:198, 1/BA/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_5IT8_006 | 1/BA/575:577, 1/BA/764:769, 1/BA/810:821, 1/BA/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_5IT8_007 | 1/CA/268:269, 1/CA/370:375, 1/CA/399:406, 1/CA/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_5IT8_008 | 1/CA/297:301, 1/CA/316:319, 1/CA/323:325, 1/CA/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_5IT8_009 | 1/CA/601:604, 1/CA/624:628, 1/CA/635:638, 1/CA/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_5IT8_010 | 1/CA/1270:1276, 1/CA/1294:1295, 1/CA/1645:1648, 1/CA/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_5IT8_011 | 1/CA/1310:1314, 1/CA/1338:1343, 1/CA/1404:1405, 1/CA/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_5IT8_012 | 1/CA/1313:1314, 1/CA/1338:1343, 1/CA/1404:1405, 1/CA/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_5IT8_013 | 1/CA/1444:1445, 1/CA/1466:1467, 1/CA/1525:1526, 1/CA/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_5IT8_014 | 1/CA/1772:1776, 1/CA/1788:1792, 1/CA/1827:1830, 1/CA/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_5IT8_015 | 1/CA/1833:1835, 1/CA/1905:1906, 1/CA/1924:1933, 1/CA/1967:1972 | No text annotation | homologous J4_5J7L_026 NA | |
| J4_5IT8_016 | 1/CA/2285:2289, 1/CA/2343:2347, 1/CA/2370:2372, 1/CA/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_5IT8_017 | 1/CA/2643:2646, 1/CA/2674:2676, 1/CA/2731:2735, 1/CA/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_5IT8_018 | 1/DA/268:269, 1/DA/370:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_5IT8_019 | 1/DA/297:301, 1/DA/316:319, 1/DA/323:325, 1/DA/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_5IT8_020 | 1/DA/601:604, 1/DA/624:628, 1/DA/635:638, 1/DA/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_5IT8_021 | 1/DA/1270:1276, 1/DA/1294:1295, 1/DA/1645:1648, 1/DA/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_5IT8_022 | 1/DA/1310:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_5IT8_023 | 1/DA/1313:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_5IT8_024 | 1/DA/1444:1445, 1/DA/1466:1467, 1/DA/1525:1526, 1/DA/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_5IT8_025 | 1/DA/1772:1776, 1/DA/1788:1792, 1/DA/1827:1830, 1/DA/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_5IT8_026 | 1/DA/1833:1835, 1/DA/1905:1906, 1/DA/1924:1933, 1/DA/1967:1972 | No text annotation | homologous J4_5J7L_026 NA | |
| J4_5IT8_027 | 1/DA/2285:2289, 1/DA/2343:2347, 1/DA/2370:2372, 1/DA/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_5IT8_028 | 1/DA/2643:2646, 1/DA/2674:2676, 1/DA/2731:2735, 1/DA/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_5IT8_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:440, 1/AA/497:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_5IT8_002 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_5IT8_003 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_5J7L_003 NA | |
| J5_5IT8_004 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:440, 1/BA/497:500, 1/BA/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_5IT8_005 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:442, 1/BA/492:500, 1/BA/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_5IT8_006 | 1/BA/58:61, 1/BA/106:113, 1/BA/314:316, 1/BA/337:339, 1/BA/350:354 | No text annotation | homologous J5_5J7L_003 NA | |
| J5_5IT8_007 | 1/CA/47:54, 1/CA/116:121, 1/CA/130:131, 1/CA/148:150, 1/CA/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_5IT8_008 | 1/CA/531:533, 1/CA/560:564, 1/CA/577:579, 1/CA/1261:1262, 1/CA/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_5IT8_009 | 1/CA/584:589, 1/CA/668:671, 1/CA/809:812, 1/CA/1195:1196, 1/CA/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_5IT8_010 | 1/CA/1674:1682, 1/CA/1706:1707, 1/CA/1751:1752, 1/CA/1756:1764, 1/CA/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_5IT8_011 | 1/CA/2057:2064, 1/CA/2446:2453, 1/CA/2500:2506, 1/CA/2583:2588, 1/CA/2606:2611 | No text annotation | ||
| J5_5IT8_012 | 1/CA/2074:2077, 1/CA/2243:2246, 1/CA/2258:2259, 1/CA/2281:2282, 1/CA/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J5_5IT8_013 | 1/DA/47:54, 1/DA/116:121, 1/DA/130:131, 1/DA/148:150, 1/DA/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_5IT8_014 | 1/DA/531:533, 1/DA/560:564, 1/DA/577:579, 1/DA/1261:1262, 1/DA/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_5IT8_015 | 1/DA/584:589, 1/DA/668:671, 1/DA/809:812, 1/DA/1195:1196, 1/DA/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_5IT8_016 | 1/DA/1674:1682, 1/DA/1706:1707, 1/DA/1751:1752, 1/DA/1756:1764, 1/DA/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_5IT8_017 | 1/DA/2057:2064, 1/DA/2446:2453, 1/DA/2500:2506, 1/DA/2583:2588, 1/DA/2606:2611 | No text annotation | ||
| J5_5IT8_018 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2282, 1/DA/2427:2435 | No text annotation | ||
| J6_5IT8_001 | 1/CA/45:46, 1/CA/179:183, 1/CA/214:224, 1/CA/231:235, 1/CA/262:266, 1/CA/426:433 | No text annotation | ||
| J6_5IT8_002 | 1/CA/2074:2077, 1/CA/2243:2246, 1/CA/2258:2259, 1/CA/2281:2284, 1/CA/2384:2395, 1/CA/2421:2435 | No text annotation | ||
| J6_5IT8_003 | 1/DA/45:46, 1/DA/179:183, 1/DA/214:224, 1/DA/231:235, 1/DA/262:266, 1/DA/426:433 | No text annotation | ||
| J6_5IT8_004 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2284, 1/DA/2384:2395, 1/DA/2421:2435 | No text annotation | ||
| J7_5IT8_001 | 1/CA/8:15, 1/CA/525:531, 1/CA/2018:2023, 1/CA/2040:2043, 1/CA/2625:2630, 1/CA/2788:2789, 1/CA/2894:2895 | No text annotation | ||
| J7_5IT8_002 | 1/CA/817:822, 1/CA/835:837, 1/CA/942:946, 1/CA/971:976, 1/CA/987:991, 1/CA/1163:1164, 1/CA/1185:1190 | No text annotation | ||
| J7_5IT8_003 | 1/DA/8:15, 1/DA/525:531, 1/DA/2018:2023, 1/DA/2040:2043, 1/DA/2625:2630, 1/DA/2788:2789, 1/DA/2894:2895 | No text annotation | ||
| J7_5IT8_004 | 1/DA/817:822, 1/DA/835:837, 1/DA/942:946, 1/DA/971:976, 1/DA/987:991, 1/DA/1163:1164, 1/DA/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5IT8_024 | No text annotation | ||
| J3_5IT8_035 | No text annotation |
Coloring options: