HL_5IT8_025

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

5IT8|1|AA|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_025 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.0289

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5IT8|1|AA|G|1134
5IT8|1|AA|U|1135
5IT8|1|AA|C|1136
5IT8|1|AA|C|1137
5IT8|1|AA|G|1138
5IT8|1|AA|G|1139
5IT8|1|AA|C|1140

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S9