HL_5IT8_043

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5IT8|1|BA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_043 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.038

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5IT8|1|BA|G|462
5IT8|1|BA|U|463
5IT8|1|BA|U|464
5IT8|1|BA|A|465
5IT8|1|BA|A|466
5IT8|1|BA|U|467
5IT8|1|BA|A|468
5IT8|1|BA|C|469
5IT8|1|BA|C|470

Current chains

Chain BA

16S rRNA

Nearby chains