HL_5IT8_071

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5IT8|1|CA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_071 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1162

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5IT8|1|CA|C|305
5IT8|1|CA|U|306
5IT8|1|CA|G|307
5IT8|1|CA|G|308
5IT8|1|CA|A|309
5IT8|1|CA|A|310
5IT8|1|CA|A|311
5IT8|1|CA|G|312

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CV

50S ribosomal protein L24