HL_5IT8_085

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5IT8|1|CA|A|781, 5IT8|1|CA|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_085 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2748

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5IT8|1|CA|U|779
5IT8|1|CA|G|780
5IT8|1|CA|A|781
5IT8|1|CA|A|782
5IT8|1|CA|A|783
5IT8|1|CA|G|784
5IT8|1|CA|G|785

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2