HL_5IT8_098

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5IT8|1|CA|A|1453, 5IT8|1|CA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_098 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1288

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

5IT8|1|CA|C|1451
5IT8|1|CA|G|1452
5IT8|1|CA|A|1453
5IT8|1|CA|C|1454
5IT8|1|CA|G|1455
5IT8|1|CA|G|1456
5IT8|1|CA|U|1457
5IT8|1|CA|U|1458
5IT8|1|CA|G|1459

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CO

50S ribosomal protein L17