HL_5IT8_139

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5IT8|1|DA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_139 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0647

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5IT8|1|DA|G|194
5IT8|1|DA|A|195
5IT8|1|DA|A|196
5IT8|1|DA|A|197
5IT8|1|DA|C|198
5IT8|1|DA|A|199
5IT8|1|DA|U|200
5IT8|1|DA|C|201

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15

Chain DY

50S ribosomal protein L28