HL_5IT8_146

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5IT8|1|DA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_146 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0445

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5IT8|1|DA|G|410
5IT8|1|DA|G|411
5IT8|1|DA|A|412
5IT8|1|DA|C|413
5IT8|1|DA|C|414
5IT8|1|DA|A|415
5IT8|1|DA|U|416
5IT8|1|DA|C|417

Current chains

Chain DA

23S rRNA

Nearby chains