HL_5IT8_159

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

5IT8|1|DA|U|958, 5IT8|1|DA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_159 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0372

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT8|1|DA|G|954
5IT8|1|DA|PSU|955
5IT8|1|DA|G|956
5IT8|1|DA|C|957
5IT8|1|DA|U|958
5IT8|1|DA|A|959
5IT8|1|DA|A|960
5IT8|1|DA|C|961
5IT8|1|DA|G|962
5IT8|1|DA|U|963

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DN

50S ribosomal protein L16