HL_5IT8_161

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5IT8|1|DA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_161 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.0238

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5IT8|1|DA|C|1064
5IT8|1|DA|U|1065
5IT8|1|DA|U|1066
5IT8|1|DA|A|1067
5IT8|1|DA|G|1068
5IT8|1|DA|A|1069
5IT8|1|DA|A|1070
5IT8|1|DA|G|1071
5IT8|1|DA|C|1072
5IT8|1|DA|A|1073
5IT8|1|DA|G|1074

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DJ

50S ribosomal protein L11