HL_5IT8_166

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

5IT8|1|DA|U|1325, 5IT8|1|DA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_166 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.0731

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5IT8|1|DA|G|1324
5IT8|1|DA|U|1325
5IT8|1|DA|U|1326
5IT8|1|DA|A|1327
5IT8|1|DA|A|1328
5IT8|1|DA|U|1329
5IT8|1|DA|C|1330

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DO

50S ribosomal protein L17

Chain DT

50S ribosomal protein L22