HL_5IT8_171

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5IT8|1|DA|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_171 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.0642

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5IT8|1|DA|C|1533
5IT8|1|DA|U|1534
5IT8|1|DA|A|1535
5IT8|1|DA|C|1536
5IT8|1|DA|G|1537
5IT8|1|DA|G|1538

Current chains

Chain DA

23S rRNA

Nearby chains