HL_5IT8_201
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GAAGACGAC
- Length
- 9 nucleotides
- Bulged bases
- 5IT8|1|DA|A|2820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IT8_201 not in the Motif Atlas
- Homologous match to HL_5J7L_201
- Geometric discrepancy: 0.059
- The information below is about HL_5J7L_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.6
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5IT8|1|DA|G|2819
5IT8|1|DA|A|2820
5IT8|1|DA|A|2821
5IT8|1|DA|G|2822
5IT8|1|DA|A|2823
5IT8|1|DA|C|2824
5IT8|1|DA|G|2825
5IT8|1|DA|A|2826
5IT8|1|DA|C|2827
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L32
- Chain DD
- 50S ribosomal protein L3
- Chain DO
- 50S ribosomal protein L17
- Chain DQ
- 50S ribosomal protein L19
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