HL_5IT8_220

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

5IT8|1|DA|U|1173, 5IT8|1|DA|U|1174, 5IT8|1|DA|A|1175, 5IT8|1|DA|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_220 not in the Motif Atlas

Homologous match to HL_5J7L_163

Geometric discrepancy: 0.0576

The information below is about HL_5J7L_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5IT8|1|DA|G|1171
5IT8|1|DA|C|1172
5IT8|1|DA|U|1173
5IT8|1|DA|U|1174
5IT8|1|DA|A|1175
5IT8|1|DA|U|1176
5IT8|1|DA|G|1177
5IT8|1|DA|C|1178

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15