HL_5IT9_010

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

5IT9|1|2|G|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_010 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.0763

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5IT9|1|2|C|392
5IT9|1|2|C|393
5IT9|1|2|U|394
5IT9|1|2|G|395
5IT9|1|2|A|396
5IT9|1|2|G|397
5IT9|1|2|A|398
5IT9|1|2|A|399
5IT9|1|2|A|400
5IT9|1|2|C|401
5IT9|1|2|G|402
5IT9|1|2|G|403

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain I

Ribosomal protein eS8