HL_5IT9_012

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

5IT9|1|2|A|451, 5IT9|1|2|U|453, 5IT9|1|2|C|454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_012 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1729

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5IT9|1|2|U|449
5IT9|1|2|A|450
5IT9|1|2|A|451
5IT9|1|2|U|452
5IT9|1|2|U|453
5IT9|1|2|C|454
5IT9|1|2|A|455

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain Y

Ribosomal protein eS24