HL_5IT9_030

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_030 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1846

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5IT9|1|2|C|1358
5IT9|1|2|A|1359
5IT9|1|2|C|1360
5IT9|1|2|U|1361
5IT9|1|2|U|1362
5IT9|1|2|G|1363

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein uS7

Chain Q

Ribosomal protein uS9

Chain T

Ribosomal protein eS19