HL_5IT9_033
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 5IT9|1|2|A|1557
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IT9_033 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.1396
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5IT9|1|2|A|1548
5IT9|1|2|U|1549
5IT9|1|2|U|1550
5IT9|1|2|G|1551
5IT9|1|2|U|1552
5IT9|1|2|A|1553
5IT9|1|2|A|1554
5IT9|1|2|U|1555
5IT9|1|2|U|1556
5IT9|1|2|A|1557
5IT9|1|2|U|1558
5IT9|1|2|U|1559
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain P
- Ribosomal protein uS19
- Chain S
- Ribosomal protein uS13
- Chain T
- Ribosomal protein eS19
- Chain d
- Ribosomal protein eS29
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